Factsheet for Bra003618.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68003	Canola	cytosol, extracellular	95.92	100.0
CDX79306	Canola	cytosol	95.51	99.57
Bra035099.1-P	Field mustard	cytosol	95.51	99.57
Bra008402.1-P	Field mustard	cytosol	95.1	99.15
AT1G79210.1	Thale cress	cytosol	94.29	98.3
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	90.2	94.04
Solyc10g008010.2.1	Tomato	extracellular, plastid	90.2	94.04
PGSC0003DMT400027339	Potato	cytosol	89.8	93.62
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	89.8	93.62
KRH13728	Soybean	cytosol	89.8	93.62
VIT_01s0011g01960.t01	Wine grape	cytosol	89.39	93.19
PGSC0003DMT400052657	Potato	cytosol	89.39	93.19
KRH65961	Soybean	cytosol	89.39	93.19
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	89.39	93.19
GSMUA_Achr5P19360_001	Banana	cytosol	88.57	92.34
TraesCS2A01G189400.1	Wheat	cytosol	87.35	91.06
EER94765	Sorghum	cytosol	87.35	91.06
EES05472	Sorghum	cytosol	87.35	91.06
HORVU3Hr1G068660.1	Barley	cytosol	87.35	91.06
TraesCS2B01G217800.1	Wheat	cytosol	87.35	91.06
TraesCS2D01G198400.1	Wheat	cytosol	87.35	91.06
TraesCS3A01G285600.1	Wheat	cytosol	87.35	91.06
TraesCS3D01G285400.1	Wheat	cytosol	86.94	90.64
GSMUA_Achr8P13980_001	Banana	cytosol	86.94	90.64
Os02t0634900-01	Rice	cytosol, plasma membrane	86.94	90.64
Os03t0387100-01	Rice	cytosol, plasma membrane	86.53	90.21
Zm00001d017336_P007	Maize	cytosol	87.35	89.17
Zm00001d017338_P006	Maize	cytosol	87.35	89.17
TraesCS3B01G319500.1	Wheat	cytosol	87.35	88.43
HORVU2Hr1G036390.6	Barley	plastid	83.67	75.93
Zm00001d017340_P002	Maize	cytosol	53.06	68.42
HORVU3Hr1G068630.1	Barley	mitochondrion	37.14	59.87
Zm00001d051211_P008	Maize	cytosol	86.94	45.32
Bra036824.1-P	Field mustard	cytosol	36.33	35.6
Bra012861.1-P	Field mustard	cytosol	36.33	35.6
Bra030921.1-P	Field mustard	cytosol	32.24	33.33
Bra013157.1-P	Field mustard	cytosol	33.47	33.33
Bra015170.1-P	Field mustard	cytosol	32.65	32.52
Bra031328.1-P	Field mustard	cytosol, mitochondrion	33.06	32.4
Bra023851.1-P	Field mustard	cytosol	32.65	32.0
Bra035332.1-P	Field mustard	cytosol	34.29	31.0
Bra027456.1-P	Field mustard	cytosol	34.69	30.91
Bra014068.1-P	Field mustard	cytosol	33.88	30.74
Bra034316.1-P	Field mustard	cytosol	30.61	30.12
Bra037085.1-P	Field mustard	cytosol	33.47	26.62

Protein Annotations

MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra003618	EnsemblPlants:Bra003618.1	EnsemblPlants:Bra003618.1-P	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	UniProt:M4CHD5
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599
PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2	SMART:SM00948
SUPFAM:SSF56235	UniParc:UPI00025413E3	:	:	:	:

Description

AT1G16470 (E=6e-095) PAB1 | PAB1 (PROTEASOME SUBUNIT PAB1); endopeptidase/ peptidase/ threonine-type endopeptidase

Coordinates

chrA07:+:14094758..14096530

Molecular Weight (calculated)

26856.1 Da

IEP (calculated)

5.152

GRAVY (calculated)

-0.184

Length

245 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEE SVVTNVNLIL QVQKIQHLTP NIGVVYSGMG PDFRVLVRKS
101: RKQAEQYNRL YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT
201: AILTLKEGFE GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.