Factsheet for Solyc07g055080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 29145071

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052657	Potato	cytosol	99.15	99.15
Solyc10g008010.2.1	Tomato	extracellular, plastid	95.74	95.74
VIT_01s0011g01960.t01	Wine grape	cytosol	94.04	94.04
AT1G79210.1	Thale cress	cytosol	93.62	93.62
AT1G16470.2	Thale cress	cytosol	93.62	93.62
CDY26894	Canola	cytosol	93.62	93.62
CDY22253	Canola	cytosol	93.62	93.62
Bra035099.1-P	Field mustard	cytosol	93.62	93.62
Bra008402.1-P	Field mustard	cytosol	93.62	93.62
CDX68003	Canola	cytosol, extracellular	93.19	93.19
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	93.19	93.19
CDX79306	Canola	cytosol	92.77	92.77
KRH13728	Soybean	cytosol	92.77	92.77
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	92.34	92.34
KRH65961	Soybean	cytosol	91.91	91.91
GSMUA_Achr5P19360_001	Banana	cytosol	91.49	91.49
GSMUA_Achr8P13980_001	Banana	cytosol	89.79	89.79
Bra003618.1-P	Field mustard	cytosol	93.19	89.39
EER94765	Sorghum	cytosol	89.36	89.36
EES05472	Sorghum	cytosol	88.94	88.94
TraesCS2D01G198400.1	Wheat	cytosol	88.51	88.51
Os03t0387100-01	Rice	cytosol, plasma membrane	88.51	88.51
TraesCS2A01G189400.1	Wheat	cytosol	88.51	88.51
TraesCS2B01G217800.1	Wheat	cytosol	88.51	88.51
TraesCS3A01G285600.1	Wheat	cytosol	88.51	88.51
TraesCS3D01G285400.1	Wheat	cytosol	88.51	88.51
Os02t0634900-01	Rice	cytosol, plasma membrane	88.51	88.51
HORVU3Hr1G068660.1	Barley	cytosol	88.51	88.51
Zm00001d017338_P006	Maize	cytosol	88.94	87.08
Zm00001d017336_P007	Maize	cytosol	88.94	87.08
TraesCS3B01G319500.1	Wheat	cytosol	88.51	85.95
HORVU2Hr1G036390.6	Barley	plastid	84.68	73.7
CDX88517	Canola	cytosol	93.62	71.66
CDX87400	Canola	extracellular	93.62	68.75
Zm00001d017340_P002	Maize	cytosol	54.47	67.37
HORVU3Hr1G068630.1	Barley	mitochondrion	37.02	57.24
Zm00001d051211_P008	Maize	cytosol	88.94	44.47
Solyc01g111450.2.1	Tomato	plastid	38.72	36.55
Solyc01g111460.2.1	Tomato	cytosol	19.15	35.16
Solyc08g016510.2.1	Tomato	extracellular	33.19	32.91
Solyc12g009140.1.1	Tomato	extracellular	34.04	32.52
Solyc02g070510.2.1	Tomato	nucleus	32.77	32.49
Solyc02g081700.1.1	Tomato	extracellular	34.04	32.26
Solyc10g081130.1.1	Tomato	extracellular, plastid	31.49	29.72
Solyc10g077030.1.1	Tomato	extracellular	31.06	29.32
Solyc04g080590.2.1	Tomato	extracellular	34.04	27.03

Protein Annotations

MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
InterPro:IPR023332	InterPro:IPR029055	UniProt:K4CG47	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc07g055080.2	EnsemblPlants:Solyc07g055080.2.1
MEROPS:T01.972	UniParc:UPI000276C818	:	:	:	:

Description

Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:K4CG47]

Coordinates

chr7:+:63229700..63234864

Molecular Weight (calculated)

25674.6 Da

IEP (calculated)

5.132

GRAVY (calculated)

-0.188

Length

235 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQTLTS NIGVVYSGMG PDSRVLVRKS RKSAEQYYRL
101: YKEPIPVTQL VRETAAVMQE FTQSGGVRPF GVSLLVAGFD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE EMELDDAVHT AILTLKEGFE
201: GQISSKNIEI GIIGTDKVFR ILTPTEIDDY LQEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.