Factsheet for Solyc10g008010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027339	Potato	cytosol	99.57	99.57
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	95.74	95.74
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	94.47	94.47
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	94.47	94.47
VIT_01s0011g01960.t01	Wine grape	cytosol	94.04	94.04
Bra008402.1-P	Field mustard	cytosol	94.04	94.04
Bra035099.1-P	Field mustard	cytosol	94.04	94.04
CDX68003	Canola	cytosol, extracellular	94.04	94.04
KRH65961	Soybean	cytosol	94.04	94.04
KRH13728	Soybean	cytosol	94.04	94.04
CDY22253	Canola	cytosol	94.04	94.04
CDY26894	Canola	cytosol	94.04	94.04
AT1G16470.2	Thale cress	cytosol	94.04	94.04
AT1G79210.1	Thale cress	cytosol	93.62	93.62
CDX79306	Canola	cytosol	93.62	93.62
GSMUA_Achr5P19360_001	Banana	cytosol	93.19	93.19
GSMUA_Achr8P13980_001	Banana	cytosol	92.34	92.34
TraesCS2A01G189400.1	Wheat	cytosol	91.06	91.06
TraesCS2B01G217800.1	Wheat	cytosol	91.06	91.06
TraesCS2D01G198400.1	Wheat	cytosol	91.06	91.06
TraesCS3A01G285600.1	Wheat	cytosol	91.06	91.06
Os03t0387100-01	Rice	cytosol, plasma membrane	91.06	91.06
HORVU3Hr1G068660.1	Barley	cytosol	91.06	91.06
Os02t0634900-01	Rice	cytosol, plasma membrane	91.06	91.06
EES05472	Sorghum	cytosol	91.06	91.06
TraesCS3D01G285400.1	Wheat	cytosol	90.64	90.64
EER94765	Sorghum	cytosol	90.64	90.64
Bra003618.1-P	Field mustard	cytosol	94.04	90.2
Zm00001d017338_P006	Maize	cytosol	91.06	89.17
Zm00001d017336_P007	Maize	cytosol	91.06	89.17
TraesCS3B01G319500.1	Wheat	cytosol	91.06	88.43
HORVU2Hr1G036390.6	Barley	plastid	87.23	75.93
CDX88517	Canola	cytosol	94.04	71.99
CDX87400	Canola	extracellular	94.04	69.06
Zm00001d017340_P002	Maize	cytosol	54.47	67.37
HORVU3Hr1G068630.1	Barley	mitochondrion	37.02	57.24
Zm00001d051211_P008	Maize	cytosol	90.64	45.32
Solyc01g111450.2.1	Tomato	plastid	38.72	36.55
Solyc01g111460.2.1	Tomato	cytosol	18.72	34.38
Solyc12g009140.1.1	Tomato	extracellular	34.89	33.33
Solyc08g016510.2.1	Tomato	extracellular	33.62	33.33
Solyc02g070510.2.1	Tomato	nucleus	33.19	32.91
Solyc02g081700.1.1	Tomato	extracellular	34.04	32.26
Solyc10g081130.1.1	Tomato	extracellular, plastid	32.34	30.52
Solyc10g077030.1.1	Tomato	extracellular	31.49	29.72
Solyc04g080590.2.1	Tomato	extracellular	33.62	26.69

Protein Annotations

MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
InterPro:IPR023332	InterPro:IPR029055	UniProt:K4CXX8	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc10g008010.2	EnsemblPlants:Solyc10g008010.2.1
MEROPS:T01.972	UniParc:UPI000276B5CD	:	:	:	:

Description

Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:K4CXX8]

Coordinates

chr10:+:2177130..2182889

Molecular Weight (calculated)

25676.6 Da

IEP (calculated)

5.132

GRAVY (calculated)

-0.212

Length

235 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA ANGVVIATEK KLPSILVDET SVQKIQTLTP NIGVVYSGMG PDSRVLVRKS RKQAEQYYRL
101: YKEPIPVTQL VRETAAVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE ELELDDAVHT AILTLKEGFE
201: GQISGKNIEI GIIGNDKVFR VLTPAEIDDY LQEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.