Factsheet for GSMUA_Achr5P19360_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P13980_001	Banana	cytosol	96.6	96.6
VIT_01s0011g01960.t01	Wine grape	cytosol	94.04	94.04
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	94.04	94.04
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	94.04	94.04
KRH13728	Soybean	cytosol	93.62	93.62
KRH65961	Soybean	cytosol	93.19	93.19
PGSC0003DMT400027339	Potato	cytosol	93.19	93.19
Solyc10g008010.2.1	Tomato	extracellular, plastid	93.19	93.19
AT1G16470.2	Thale cress	cytosol	92.34	92.34
CDY26894	Canola	cytosol	92.34	92.34
CDY22253	Canola	cytosol	92.34	92.34
Bra008402.1-P	Field mustard	cytosol	92.34	92.34
Bra035099.1-P	Field mustard	cytosol	92.34	92.34
CDX68003	Canola	cytosol, extracellular	92.34	92.34
CDX79306	Canola	cytosol	92.34	92.34
TraesCS2D01G198400.1	Wheat	cytosol	91.91	91.91
EES05472	Sorghum	cytosol	91.91	91.91
TraesCS2B01G217800.1	Wheat	cytosol	91.91	91.91
TraesCS2A01G189400.1	Wheat	cytosol	91.91	91.91
TraesCS3A01G285600.1	Wheat	cytosol	91.91	91.91
HORVU3Hr1G068660.1	Barley	cytosol	91.91	91.91
AT1G79210.1	Thale cress	cytosol	91.49	91.49
Os02t0634900-01	Rice	cytosol, plasma membrane	91.49	91.49
Os03t0387100-01	Rice	cytosol, plasma membrane	91.49	91.49
TraesCS3D01G285400.1	Wheat	cytosol	91.49	91.49
PGSC0003DMT400052657	Potato	cytosol	91.49	91.49
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	91.49	91.49
EER94765	Sorghum	cytosol	91.49	91.49
Zm00001d017338_P006	Maize	cytosol	91.91	90.0
Zm00001d017336_P007	Maize	cytosol	91.91	90.0
TraesCS3B01G319500.1	Wheat	cytosol	91.91	89.26
Bra003618.1-P	Field mustard	cytosol	92.34	88.57
HORVU2Hr1G036390.6	Barley	plastid	88.09	76.67
CDX88517	Canola	cytosol	92.34	70.68
Zm00001d017340_P002	Maize	cytosol	56.6	70.0
CDX87400	Canola	extracellular	92.34	67.81
HORVU3Hr1G068630.1	Barley	mitochondrion	39.57	61.18
Zm00001d051211_P008	Maize	cytosol	91.49	45.74
GSMUA_Achr11P...	Banana	cytosol	39.57	37.35
GSMUA_Achr2P03470_001	Banana	cytosol	38.72	36.55
GSMUA_Achr7P21280_001	Banana	cytosol	34.47	35.37
GSMUA_Achr11P...	Banana	peroxisome	34.04	33.76
GSMUA_Achr10P...	Banana	cytosol	35.32	33.74
GSMUA_Achr10P...	Banana	peroxisome	33.62	33.33
GSMUA_Achr6P11610_001	Banana	cytosol	34.47	32.93
GSMUA_Achr4P00300_001	Banana	cytosol	35.32	31.09
GSMUA_Achr8P23960_001	Banana	cytosol	32.34	30.52
GSMUA_Achr10P...	Banana	cytosol	34.04	30.19
GSMUA_Achr4P10040_001	Banana	cytosol	31.49	29.72
GSMUA_Achr6P02000_001	Banana	cytosol	21.7	26.29
GSMUA_Achr6P10850_001	Banana	mitochondrion	32.77	25.25
GSMUA_Achr3P02110_001	Banana	cytosol	13.62	23.36

Protein Annotations

MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
EnsemblPlantsGene:GSMUA_Achr5G19360_001	EnsemblPlants:GSMUA_Achr5P19360_001	EnsemblPlants:GSMUA_Achr5T19360_001	InterPro:IPR023332	InterPro:IPR029055	UniProt:M0SZW5
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599
PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2	SMART:SM00948
SUPFAM:SSF56235	UniParc:UPI000296A4AC	:	:	:	:

Description

Proteasome subunit alpha type-2-A [Source:GMGC_GENE;Acc:GSMUA_Achr5G19360_001]

Coordinates

chr5:+:20991762..21000181

Molecular Weight (calculated)

25643.6 Da

IEP (calculated)

5.860

GRAVY (calculated)

-0.174

Length

235 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDET SVQKIQLMTT NIGVVYSGMG PDSRVLVRKS RKQAQQYFRL
101: YKEAIPVTQL VRETAAVMQE FTQSGGVRPF GVSLLIAGYD DNGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAVHT AILTLKEGFQ
201: GQISGKNIEI GIIGADRKFR VLTPAEIDDY LAEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.