Factsheet for PGSC0003DMT400027339

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008010.2.1	Tomato	extracellular, plastid	99.57	99.57
PGSC0003DMT400052657	Potato	cytosol	96.17	96.17
VIT_01s0011g01960.t01	Wine grape	cytosol	94.47	94.47
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	94.04	94.04
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	94.04	94.04
Bra008402.1-P	Field mustard	cytosol	93.62	93.62
Bra035099.1-P	Field mustard	cytosol	93.62	93.62
CDX68003	Canola	cytosol, extracellular	93.62	93.62
KRH65961	Soybean	cytosol	93.62	93.62
KRH13728	Soybean	cytosol	93.62	93.62
CDY22253	Canola	cytosol	93.62	93.62
CDY26894	Canola	cytosol	93.62	93.62
AT1G16470.2	Thale cress	cytosol	93.62	93.62
AT1G79210.1	Thale cress	cytosol	93.19	93.19
GSMUA_Achr5P19360_001	Banana	cytosol	93.19	93.19
CDX79306	Canola	cytosol	93.19	93.19
GSMUA_Achr8P13980_001	Banana	cytosol	91.91	91.91
TraesCS2A01G189400.1	Wheat	cytosol	91.06	91.06
TraesCS2B01G217800.1	Wheat	cytosol	91.06	91.06
TraesCS2D01G198400.1	Wheat	cytosol	91.06	91.06
TraesCS3A01G285600.1	Wheat	cytosol	91.06	91.06
Os03t0387100-01	Rice	cytosol, plasma membrane	91.06	91.06
HORVU3Hr1G068660.1	Barley	cytosol	91.06	91.06
Os02t0634900-01	Rice	cytosol, plasma membrane	91.06	91.06
EES05472	Sorghum	cytosol	91.06	91.06
TraesCS3D01G285400.1	Wheat	cytosol	90.64	90.64
EER94765	Sorghum	cytosol	90.64	90.64
Bra003618.1-P	Field mustard	cytosol	93.62	89.8
Zm00001d017338_P006	Maize	cytosol	91.06	89.17
Zm00001d017336_P007	Maize	cytosol	91.06	89.17
TraesCS3B01G319500.1	Wheat	cytosol	91.06	88.43
HORVU2Hr1G036390.6	Barley	plastid	87.23	75.93
CDX88517	Canola	cytosol	93.62	71.66
CDX87400	Canola	extracellular	93.62	68.75
Zm00001d017340_P002	Maize	cytosol	54.47	67.37
HORVU3Hr1G068630.1	Barley	mitochondrion	37.02	57.24
Zm00001d051211_P008	Maize	cytosol	90.64	45.32
PGSC0003DMT400015849	Potato	cytosol	38.3	36.14
PGSC0003DMT400007520	Potato	cytosol, extracellular	34.89	33.33
PGSC0003DMT400024982	Potato	cytosol, nucleus, peroxisome	33.19	32.91
PGSC0003DMT400049388	Potato	cytosol	34.47	32.53
PGSC0003DMT400054523	Potato	cytosol	32.77	32.49
PGSC0003DMT400018852	Potato	cytosol	33.62	31.85
PGSC0003DMT400072226	Potato	cytosol	31.91	30.12
PGSC0003DMT400018521	Potato	cytosol	31.06	29.32
PGSC0003DMT400009588	Potato	cytosol	33.62	28.83
PGSC0003DMT400039976	Potato	cytosol	33.19	28.57

Protein Annotations

EntrezGene:102577817	MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	ProteinID:ABA81880	ProteinID:ABA81880.1	ProteinID:ABB16986
ProteinID:ABB16986.1	EMBL:DQ207872	EMBL:DQ228337	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
EnsemblPlantsGene:PGSC0003DMG400010543	PGSC:PGSC0003DMG400010543	EnsemblPlants:PGSC0003DMT400027339	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599
PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2	UniProt:Q38M52
SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.972	UniParc:UPI00005CA273	RefSeq:XP_006364101.1	:

Description

Proteasome subunit alpha type [Source:PGSC_GENE;Acc:PGSC0003DMG400010543]

Coordinates

chr10:+:3308837..3315944

Molecular Weight (calculated)

25666.6 Da

IEP (calculated)

5.132

GRAVY (calculated)

-0.209

Length

235 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA ANGVVIATEK KLPSILVDET SVQKIQTLTP NIGVVYSGMG PDSRVLVRKS RKQAEQYYRL
101: YKESIPVTQL VRETAAVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE ELELDDAVHT AILTLKEGFE
201: GQISGKNIEI GIIGNDKVFR VLTPAEIDDY LQEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.