Factsheet for PGSC0003DMT400049388

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018852	Potato	cytosol	89.56	89.92
Bra023851.1-P	Field mustard	cytosol	87.15	86.8
Bra031328.1-P	Field mustard	cytosol, mitochondrion	86.75	86.4
AT3G22110.1	Thale cress	cytosol, mitochondrion	86.35	86.0
CDY66240	Canola	extracellular	69.48	85.22
CDY37382	Canola	cytosol	68.67	85.07
CDY69258	Canola	cytosol, mitochondrion	70.68	84.62
CDY19309	Canola	extracellular	67.87	84.08
CDY39501	Canola	cytosol, mitochondrion	67.87	84.08
TraesCS7D01G129900.1	Wheat	cytosol	84.34	84.0
TraesCS7B01G030800.1	Wheat	plastid	84.34	84.0
TraesCS7A01G130500.1	Wheat	plastid	84.34	84.0
Zm00001d045194_P001	Maize	extracellular	83.94	83.6
Zm00001d036319_P001	Maize	cytosol	83.94	83.6
OQU75904	Sorghum	cytosol	83.53	83.2
Os06t0176000-01	Rice	cytosol	83.13	82.8
Os06t0177100-01	Rice	plastid	83.13	82.8
Os06t0167600-01	Rice	cytosol	82.73	82.4
AT4G15165.1	Thale cress	cytosol	68.67	82.21
HORVU7Hr1G027220.2	Barley	cytosol	80.72	75.85
Bra037085.1-P	Field mustard	cytosol	87.15	70.45
PGSC0003DMT400024982	Potato	cytosol, nucleus, peroxisome	39.36	41.35
PGSC0003DMT400054523	Potato	cytosol	39.36	41.35
PGSC0003DMT400015849	Potato	cytosol	35.74	35.74
PGSC0003DMT400027339	Potato	cytosol	32.53	34.47
PGSC0003DMT400052657	Potato	cytosol	32.53	34.47
PGSC0003DMT400007520	Potato	cytosol, extracellular	32.13	32.52
PGSC0003DMT400072226	Potato	cytosol	30.52	30.52
PGSC0003DMT400009588	Potato	cytosol	33.33	30.29
PGSC0003DMT400018521	Potato	cytosol	29.72	29.72
PGSC0003DMT400039976	Potato	cytosol	32.53	29.67

Protein Annotations

EntrezGene:102589450	MapMan:19.2.6.1.1.3	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	UniProt:M1BNM8	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	EnsemblPlantsGene:PGSC0003DMG401019187	PGSC:PGSC0003DMG401019187	EnsemblPlants:PGSC0003DMT400049388	ScanProsite:PS00388	PFscan:PS51475
PANTHER:PTHR11599	PANTHER:PTHR11599:SF13	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha4
SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.973	UniParc:UPI0002966497	RefSeq:XP_006349473.1	RefSeq:XP_015165076.1
RefSeq:XP_015165077.1	RefSeq:XP_015165078.1	RefSeq:XP_015165079.1	:	:	:

Description

Proteasome subunit alpha type [Source:PGSC_GENE;Acc:PGSC0003DMG401019187]

Coordinates

chr10:-:50614931..50615680

Molecular Weight (calculated)

27576.9 Da

IEP (calculated)

6.279

GRAVY (calculated)

-0.310

Length

249 amino acids

Sequence
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILAK DGVVLVGEKK VTSKLLQTST STEKMYKIDD HIACAVAGMM SDANILINTA RVQAQRYTFA
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KNYGFQLYMS DPSGNYSGWK AAAIGANNQP AQSMLKQDYK DDMTREEAVQ LVLKVLSKTM
201: DSTSLTSDKL ELAEVFHTNG KVKYQVHSLE SVNKLLIQYG LTQPDPEAA

Best Arabidopsis Sequence Match ( AT3G22110.1 )
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SAEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTFM
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS

Arabidopsis Description

PAC1Proteasome subunit alpha type-4-A [Source:UniProtKB/Swiss-Prot;Acc:O81148]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.