Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023851.1-P | Field mustard | cytosol | 96.4 | 96.4 |
| CDY39501 | Canola | cytosol, mitochondrion | 76.8 | 95.52 |
| Bra031328.1-P | Field mustard | cytosol, mitochondrion | 95.2 | 95.2 |
| CDY66240 | Canola | extracellular | 77.2 | 95.07 |
| CDY19309 | Canola | extracellular | 76.4 | 95.02 |
| CDY37382 | Canola | cytosol | 76.0 | 94.53 |
| AT4G15165.1 | Thale cress | cytosol | 77.2 | 92.79 |
| KRH00322 | Soybean | cytosol | 91.2 | 91.2 |
| KRH76017 | Soybean | cytosol | 90.4 | 90.4 |
| KRH65617 | Soybean | nucleus | 90.4 | 90.4 |
| KRH49455 | Soybean | endoplasmic reticulum, nucleus | 90.0 | 90.0 |
| VIT_10s0042g00070.t01 | Wine grape | cytosol | 89.2 | 89.2 |
| Solyc02g081700.1.1 | Tomato | extracellular | 88.4 | 89.11 |
| GSMUA_Achr7P21280_001 | Banana | cytosol | 79.6 | 86.9 |
| PGSC0003DMT400049388 | Potato | cytosol | 86.0 | 86.35 |
| Zm00001d045194_P001 | Maize | extracellular | 85.2 | 85.2 |
| OQU75904 | Sorghum | cytosol | 84.4 | 84.4 |
| Zm00001d036319_P001 | Maize | cytosol | 84.4 | 84.4 |
| GSMUA_Achr6P02000_001 | Banana | cytosol | 64.4 | 82.99 |
| TraesCS7D01G129900.1 | Wheat | cytosol | 82.8 | 82.8 |
| TraesCS7B01G030800.1 | Wheat | plastid | 82.8 | 82.8 |
| TraesCS7A01G130500.1 | Wheat | plastid | 82.8 | 82.8 |
| Os06t0177100-01 | Rice | plastid | 82.8 | 82.8 |
| Os06t0176000-01 | Rice | cytosol | 82.8 | 82.8 |
| Os06t0167600-01 | Rice | cytosol | 82.8 | 82.8 |
| GSMUA_Achr4P00300_001 | Banana | cytosol | 86.4 | 80.9 |
| HORVU7Hr1G027220.2 | Barley | cytosol | 78.8 | 74.34 |
| AT3G14290.1 | Thale cress | cytosol | 38.0 | 40.08 |
| AT1G53850.1 | Thale cress | cytosol | 37.6 | 39.66 |
| AT3G51260.1 | Thale cress | cytosol | 35.2 | 35.2 |
| AT5G66140.1 | Thale cress | cytosol | 34.8 | 34.8 |
| AT1G16470.2 | Thale cress | cytosol | 32.4 | 34.47 |
| AT1G79210.1 | Thale cress | cytosol | 32.4 | 34.47 |
| AT5G35590.1 | Thale cress | cytosol | 32.4 | 32.93 |
| AT2G05840.1 | Thale cress | cytosol | 30.4 | 30.89 |
| AT5G42790.1 | Thale cress | cytosol | 33.2 | 29.86 |
| AT1G47250.1 | Thale cress | cytosol | 32.8 | 29.6 |
| AT2G27020.2 | Thale cress | cytoskeleton, cytosol, nucleus | 29.6 | 21.08 |
Protein Annotations
| MapMan:19.2.6.1.1.3 | Gene3D:3.60.20.10 | EntrezGene:821774 | UniProt:A0A178VJ65 | ProteinID:AEE76591.1 | EMBL:AF043521 |
| EMBL:AF386953 | ArrayExpress:AT3G22110 | EnsemblPlantsGene:AT3G22110 | RefSeq:AT3G22110 | TAIR:AT3G22110 | RefSeq:AT3G22110-TAIR-G |
| EnsemblPlants:AT3G22110.1 | TAIR:AT3G22110.1 | EMBL:AY085914 | ProteinID:BAB03060.1 | EMBL:BT000001 | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005829 | GO:GO:0005839 |
| GO:GO:0005840 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 | GO:GO:0022626 |
| GO:GO:0046686 | GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 | RefSeq:NP_188850.1 | InterPro:Ntn_hydrolases_N |
| UniProt:O81148 | ProteinID:OAP05768.1 | Symbol:PAC1 | PFAM:PF00227 | PFAM:PF10584 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF13 | InterPro:Proteasome_alpha-type |
| InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | InterPro:Proteasome_subunit_alpha4 | SMART:SM00948 | SUPFAM:SSF56235 | UniParc:UPI0000000B69 |
| EMBL:Y13181 | SEG:seg | : | : | : | : |
Description
PAC1Proteasome subunit alpha type-4-A [Source:UniProtKB/Swiss-Prot;Acc:O81148]
Coordinates
chr3:-:7792549..7794262
Molecular Weight (calculated)
27476.7 Da
IEP (calculated)
7.142
GRAVY (calculated)
-0.281
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SAEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTFM
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.