CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
mitochondrion: 27780359
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76017	Soybean	cytosol	100.0	100.0
KRH00322	Soybean	cytosol	97.2	97.2
KRH49455	Soybean	endoplasmic reticulum, nucleus	96.8	96.8
VIT_10s0042g00070.t01	Wine grape	cytosol	94.0	94.0
PGSC0003DMT400018852	Potato	cytosol	92.0	92.74
Solyc02g081700.1.1	Tomato	extracellular	91.6	92.34
Bra023851.1-P	Field mustard	cytosol	90.8	90.8
AT3G22110.1	Thale cress	cytosol, mitochondrion	90.4	90.4
Bra031328.1-P	Field mustard	cytosol, mitochondrion	90.0	90.0
CDY39501	Canola	cytosol, mitochondrion	72.0	89.55
CDY69258	Canola	cytosol, mitochondrion	74.4	89.42
CDY66240	Canola	extracellular	72.4	89.16
CDY19309	Canola	extracellular	71.6	89.05
GSMUA_Achr7P21280_001	Banana	cytosol	81.2	88.65
CDY37382	Canola	cytosol	70.8	88.06
AT4G15165.1	Thale cress	cytosol	72.4	87.02
GSMUA_Achr6P02000_001	Banana	cytosol	66.0	85.05
Zm00001d045194_P001	Maize	extracellular	84.8	84.8
OQU75904	Sorghum	cytosol	84.8	84.8
Zm00001d036319_P001	Maize	cytosol	84.0	84.0
GSMUA_Achr4P00300_001	Banana	cytosol	89.6	83.9
TraesCS7A01G130500.1	Wheat	plastid	82.8	82.8
TraesCS7D01G129900.1	Wheat	cytosol	82.8	82.8
TraesCS7B01G030800.1	Wheat	plastid	82.8	82.8
Os06t0167600-01	Rice	cytosol	82.0	82.0
Os06t0176000-01	Rice	cytosol	82.0	82.0
Os06t0177100-01	Rice	plastid	82.0	82.0
HORVU7Hr1G027220.2	Barley	cytosol	79.2	74.72
Bra037085.1-P	Field mustard	cytosol	89.6	72.73
KRH36037	Soybean	endoplasmic reticulum, nucleus	38.4	40.51
KRG90710	Soybean	peroxisome	38.4	40.51
KRH69234	Soybean	endoplasmic reticulum	38.4	40.51
KRH31817	Soybean	cytosol	38.0	40.08
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	34.0	36.17
KRH13728	Soybean	cytosol	34.0	36.17
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	33.6	35.74
KRH65961	Soybean	cytosol	33.2	35.32
KRH69759	Soybean	endoplasmic reticulum, nucleus	34.8	34.94
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	34.8	34.94
KRH26034	Soybean	nucleus	33.2	33.74
KRH55422	Soybean	cytosol, endoplasmic reticulum	32.8	33.33
KRG94269	Soybean	cytosol	30.8	30.92
KRH05846	Soybean	cytosol, nucleus	34.4	30.28
KRH38836	Soybean	cytosol, nucleus	34.0	29.82
KRH15173	Soybean	cytosol, nucleus	34.0	29.51
KRH57704	Soybean	cytosol, endoplasmic reticulum	30.0	28.74
KRH57899	Soybean	cytosol	16.0	26.14
KRH20407	Soybean	cytosol	13.6	22.22

Protein Annotations

EntrezGene:100802854	EntrezGene:102662733	MapMan:19.2.6.1.1.3	Gene3D:3.60.20.10	UniProt:A0A0R0LAF9	EMBL:ACUP02000549
EMBL:ACUP02001440	EnsemblPlantsGene:GLYMA_03G049700	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
InterPro:IPR023332	InterPro:IPR029055	ProteinID:KRH65616.1	EnsemblPlants:KRH65617	ProteinID:KRH65617	ProteinID:KRH65617.1
ProteinID:KRH76016.1	ProteinID:KRH76017.1	ProteinID:KRH76018.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF13	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha4	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0001890A5B	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:6485560..6488919

Molecular Weight (calculated)

27312.6 Da

IEP (calculated)

6.025

GRAVY (calculated)

-0.231

Length

250 amino acids

Sequence
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGTAIGILSK DGVVLVGEKK VTSKLLQTST STEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTYA
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KNFGFQLYMS DPSGNYGGWK AGAIGANNQA AQSILKQDYK DDITREEAVQ LALKVLSKTM
201: DSTSLTSEKL ELAEVFLSPS GKVKYEVCSP EALTKMLVKS GVTQPATDTA

Best Arabidopsis Sequence Match ( AT3G22110.1 )
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SAEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTFM
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS

Arabidopsis Description

PAC1Proteasome subunit alpha type-4-A [Source:UniProtKB/Swiss-Prot;Acc:O81148]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.