CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39501	Canola	cytosol, mitochondrion	89.9	93.03
AT4G15165.1	Thale cress	cytosol	92.79	92.79
CDY19309	Canola	extracellular	89.42	92.54
GSMUA_Achr6P02000_001	Banana	cytosol	77.88	83.51
CDY66240	Canola	extracellular	79.33	81.28
CDY37382	Canola	cytosol	77.4	80.1
KRH00322	Soybean	cytosol	90.38	75.2
KRH76017	Soybean	cytosol	89.42	74.4
KRH65617	Soybean	nucleus	89.42	74.4
KRH49455	Soybean	endoplasmic reticulum, nucleus	89.42	74.4
VIT_10s0042g00070.t01	Wine grape	cytosol	88.94	74.0
Solyc02g081700.1.1	Tomato	extracellular	86.06	72.18
Zm00001d045194_P001	Maize	extracellular	85.1	70.8
PGSC0003DMT400049388	Potato	cytosol	84.62	70.68
Zm00001d036319_P001	Maize	cytosol	84.13	70.0
OQU75904	Sorghum	cytosol	84.13	70.0
GSMUA_Achr7P21280_001	Banana	cytosol	76.44	69.43
TraesCS7B01G030800.1	Wheat	plastid	83.17	69.2
TraesCS7D01G129900.1	Wheat	cytosol	83.17	69.2
TraesCS7A01G130500.1	Wheat	plastid	83.17	69.2
Os06t0177100-01	Rice	plastid	82.21	68.4
Os06t0176000-01	Rice	cytosol	82.21	68.4
Os06t0167600-01	Rice	cytosol	82.21	68.4
Bra037085.1-P	Field mustard	cytosol	99.04	66.88
GSMUA_Achr4P00300_001	Banana	cytosol	85.58	66.67
HORVU7Hr1G027220.2	Barley	cytosol	78.37	61.51
CDY08208	Canola	peroxisome	35.58	30.33
CDY29009	Canola	cytosol	35.58	29.6
CDX90655	Canola	cytosol	35.58	29.6
CDY51800	Canola	peroxisome	35.58	29.6
CDX77988	Canola	cytosol, extracellular	35.1	29.2
CDX73737	Canola	cytosol, extracellular	35.1	29.2
CDY21248	Canola	cytosol	19.23	28.57
CDY02493	Canola	mitochondrion	36.54	27.14
CDY25683	Canola	cytosol, plastid	36.54	26.86
CDY26894	Canola	cytosol	27.88	24.68
CDX79306	Canola	cytosol	27.88	24.68
CDX68003	Canola	cytosol, extracellular	27.88	24.68
CDY22253	Canola	cytosol	27.88	24.68
CDY50408	Canola	cytosol, extracellular	28.85	24.59
CDX71476	Canola	cytosol	29.33	24.5
CDX77059	Canola	cytosol	29.33	24.5
CDY48190	Canola	cytosol	29.33	24.5
CDY04473	Canola	cytosol	29.33	24.5
CDY33398	Canola	cytosol, extracellular	28.85	24.39
CDY18045	Canola	cytosol	28.85	24.39
CDY47593	Canola	cytosol	31.73	24.18
CDY02422	Canola	cytosol	31.25	23.99
CDY17035	Canola	cytosol	31.25	23.81
CDY52371	Canola	cytosol	31.25	23.64
CDX71518	Canola	cytosol	30.77	23.62
CDX95156	Canola	cytosol	31.25	23.47
CDX93103	Canola	cytosol	28.85	22.81
CDX81411	Canola	mitochondrion, plastid	30.77	22.61
CDX88517	Canola	cytosol	27.88	18.89
CDX87400	Canola	extracellular	27.88	18.12

Protein Annotations

Gene3D:3.60.20.10	MapMan:50.3.4	GO:A0A078JP00	UniProt:A0A078JP00	EnsemblPlants:CDY69258	ProteinID:CDY69258
ProteinID:CDY69258.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00084291001
InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
ScanProsite:PS00854	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF13	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha4	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0004EEAD51
SEG:seg	:	:	:	:	:

Description

BnaAnng29850DPutative proteasome subunit alpha type-4-B [Source:Projected from Arabidopsis thaliana (AT4G15165) UniProtKB/Swiss-Prot;Acc:F4JJE5]

Coordinates

chrLK038970:-:2221..3749

Molecular Weight (calculated)

22571.8 Da

IEP (calculated)

6.684

GRAVY (calculated)

-0.274

Length

208 amino acids

Sequence
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILAK DGVVLIGEKK VTSKLLQTST SAEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRWDKN
101: HGFQLYMSDP SGNYGGWKAA AVGANNQAAQ SILKQDYKDD ASREEVVELA LKVLSKTMDS TSLTSEKLEL AEVFLTPSGS VQYHVHSPES LTKLLVKHGV
201: TQPAAETS

Best Arabidopsis Sequence Match ( AT4G15165.1 )
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILAK DGVVLVGEKK VTSKLLQTSS SMEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRWDRN
101: HGFQLYMSDP SGNYGGWQAA AVGANNQAAQ SILKQDYKDD ATREEVVQLA IKVLSKTMDS TSLTAEKLEL AELYLTPSKC VKYHVHSPDS LTKLLVKHGV
201: TQPAAETS

Arabidopsis Description

PAC2Putative proteasome subunit alpha type-4-B [Source:UniProtKB/Swiss-Prot;Acc:F4JJE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.