Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66240 | Canola | extracellular | 94.03 | 93.1 |
| CDY39501 | Canola | cytosol, mitochondrion | 81.09 | 81.09 |
| CDY19309 | Canola | extracellular | 80.6 | 80.6 |
| CDY69258 | Canola | cytosol, mitochondrion | 80.1 | 77.4 |
| AT3G22110.1 | Thale cress | cytosol, mitochondrion | 94.53 | 76.0 |
| KRH00322 | Soybean | cytosol | 89.05 | 71.6 |
| VIT_10s0042g00070.t01 | Wine grape | cytosol | 88.06 | 70.8 |
| KRH76017 | Soybean | cytosol | 88.06 | 70.8 |
| KRH65617 | Soybean | nucleus | 88.06 | 70.8 |
| KRH49455 | Soybean | endoplasmic reticulum, nucleus | 88.06 | 70.8 |
| Solyc02g081700.1.1 | Tomato | extracellular | 86.07 | 69.76 |
| Zm00001d045194_P001 | Maize | extracellular | 85.57 | 68.8 |
| PGSC0003DMT400049388 | Potato | cytosol | 85.07 | 68.67 |
| OQU75904 | Sorghum | cytosol | 84.58 | 68.0 |
| Zm00001d036319_P001 | Maize | cytosol | 84.58 | 68.0 |
| TraesCS7A01G130500.1 | Wheat | plastid | 84.58 | 68.0 |
| TraesCS7B01G030800.1 | Wheat | plastid | 84.58 | 68.0 |
| TraesCS7D01G129900.1 | Wheat | cytosol | 84.58 | 68.0 |
| GSMUA_Achr7P21280_001 | Banana | cytosol | 77.11 | 67.69 |
| Os06t0177100-01 | Rice | plastid | 83.58 | 67.2 |
| Os06t0176000-01 | Rice | cytosol | 83.58 | 67.2 |
| Os06t0167600-01 | Rice | cytosol | 83.58 | 67.2 |
| GSMUA_Achr6P02000_001 | Banana | cytosol | 63.18 | 65.46 |
| GSMUA_Achr4P00300_001 | Banana | cytosol | 86.57 | 65.17 |
| HORVU7Hr1G027220.2 | Barley | cytosol | 78.61 | 59.62 |
| CDY08208 | Canola | peroxisome | 34.33 | 28.28 |
| CDY51800 | Canola | peroxisome | 34.33 | 27.6 |
| CDY26894 | Canola | cytosol | 31.34 | 26.81 |
| CDX68003 | Canola | cytosol, extracellular | 31.34 | 26.81 |
| CDX79306 | Canola | cytosol | 31.34 | 26.81 |
| CDY22253 | Canola | cytosol | 31.34 | 26.81 |
| CDY29009 | Canola | cytosol | 32.84 | 26.4 |
| CDX73737 | Canola | cytosol, extracellular | 32.84 | 26.4 |
| CDX90655 | Canola | cytosol | 32.84 | 26.4 |
| CDX77988 | Canola | cytosol, extracellular | 32.84 | 26.4 |
| CDY02493 | Canola | mitochondrion | 35.32 | 25.36 |
| CDY25683 | Canola | cytosol, plastid | 35.32 | 25.09 |
| CDY18045 | Canola | cytosol | 29.85 | 24.39 |
| CDY33398 | Canola | cytosol, extracellular | 29.85 | 24.39 |
| CDY47593 | Canola | cytosol | 32.84 | 24.18 |
| CDY17035 | Canola | cytosol | 32.34 | 23.81 |
| CDY50408 | Canola | cytosol, extracellular | 28.86 | 23.77 |
| CDY02422 | Canola | cytosol | 31.84 | 23.62 |
| CDX71518 | Canola | cytosol | 31.84 | 23.62 |
| CDY21248 | Canola | cytosol | 16.42 | 23.57 |
| CDY52371 | Canola | cytosol | 31.84 | 23.27 |
| CDX95156 | Canola | cytosol | 31.84 | 23.1 |
| CDX77059 | Canola | cytosol | 28.36 | 22.89 |
| CDY48190 | Canola | cytosol | 28.36 | 22.89 |
| CDX71476 | Canola | cytosol | 28.36 | 22.89 |
| CDY04473 | Canola | cytosol | 28.36 | 22.89 |
| CDX93103 | Canola | cytosol | 29.85 | 22.81 |
| CDX81411 | Canola | mitochondrion, plastid | 29.85 | 21.2 |
| CDX88517 | Canola | cytosol | 31.34 | 20.52 |
| CDX87400 | Canola | extracellular | 31.34 | 19.69 |
Protein Annotations
| Gene3D:3.60.20.10 | MapMan:35.1 | GO:A0A078HHN9 | UniProt:A0A078HHN9 | EnsemblPlants:CDY37382 | ProteinID:CDY37382 |
| ProteinID:CDY37382.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 |
| GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 | GO:GO:0051603 | EnsemblPlantsGene:GSBRNA2T00063942001 |
| InterPro:IPR023332 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 |
| PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF13 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b |
| InterPro:Proteasome_subunit_alpha4 | SMART:SM00948 | SUPFAM:SSF56235 | UniParc:UPI0004EF3F7E | SEG:seg | : |
Description
BnaC05g30480DProteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A078HHN9]
Coordinates
chrLK032399:-:56228..57266
Molecular Weight (calculated)
22136.1 Da
IEP (calculated)
7.072
GRAVY (calculated)
-0.449
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGEKKV TSKLLQTSTY SEKMYKIDDH LVQSLCDTKQ GYTQFGGLRP FGVSFLFAGW DKNHGFQLYM
101: SDPSGNYGGW KAAAVGANNQ AAQSLLKQDY KEDATREEAV ELALKVLSKT MDSTSLTSEK LELAEVFLTP SGTVKYHVHS PDSLTKLLLK HGVTQPAAES
201: S
101: SDPSGNYGGW KAAAVGANNQ AAQSLLKQDY KEDATREEAV ELALKVLSKT MDSTSLTSEK LELAEVFLTP SGTVKYHVHS PDSLTKLLLK HGVTQPAAES
201: S
001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SAEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTFM
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS
Arabidopsis Description
PAC1Proteasome subunit alpha type-4-A [Source:UniProtKB/Swiss-Prot;Acc:O81148]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.