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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 3
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G66140.1 Thale cress cytosol 62.54 70.8
CDY29009 Canola cytosol 62.19 70.4
CDX77988 Canola cytosol, extracellular 62.19 70.4
CDX73737 Canola cytosol, extracellular 61.84 70.0
CDX90655 Canola cytosol 61.48 69.6
VIT_04s0023g03690.t01 Wine grape cytosol 60.42 68.67
GSMUA_Achr2P03470_001 Banana cytosol 60.42 68.67
PGSC0003DMT400015849 Potato cytosol 60.42 68.67
Solyc01g111450.2.1 Tomato plastid 60.42 68.67
Zm00001d022629_P001 Maize cytosol 60.07 68.27
Zm00001d006235_P001 Maize cytosol, extracellular 60.07 68.27
KRH69759 Soybean endoplasmic reticulum, nucleus 60.07 68.27
EER97100 Sorghum cytosol 59.72 67.87
KRH08047 Soybean cytosol, endoplasmic reticulum, nucleus 59.72 67.87
VIT_03s0038g02300.t01 Wine grape cytosol 59.72 67.87
GSMUA_Achr11P... Banana cytosol 59.36 67.47
Zm00001d053217_P001 Maize cytosol, extracellular 59.01 67.07
TraesCS5A01G329300.1 Wheat cytosol 58.66 66.67
TraesCS5B01G329400.1 Wheat cytosol 58.66 66.67
Os09t0538200-01 Rice cytosol, plastid 58.66 66.67
Os08t0548900-01 Rice plastid 58.66 66.67
HORVU5Hr1G083350.1 Barley cytosol 58.66 66.67
EES15231 Sorghum cytosol 58.66 66.67
TraesCS7A01G272000.1 Wheat cytosol 58.3 66.27
TraesCS7B01G170000.1 Wheat cytosol, golgi, plastid, unclear 58.3 66.27
TraesCS7D01G272300.1 Wheat cytosol 58.3 66.27
HORVU7Hr1G057390.2 Barley cytosol, nucleus, plastid 59.36 59.15
CDX68003 Canola cytosol, extracellular 26.5 31.91
CDX79306 Canola cytosol 26.5 31.91
CDY22253 Canola cytosol 26.5 31.91
CDY26894 Canola cytosol 26.5 31.91
CDY69258 Canola cytosol, mitochondrion 22.61 30.77
CDY18045 Canola cytosol 26.5 30.49
CDY33398 Canola cytosol, extracellular 26.5 30.49
CDY50408 Canola cytosol, extracellular 26.15 30.33
CDY21248 Canola cytosol 14.84 30.0
CDY08208 Canola peroxisome 25.8 29.92
CDY37382 Canola cytosol 21.2 29.85
CDY66240 Canola extracellular 21.2 29.56
CDY51800 Canola peroxisome 25.8 29.2
CDY39501 Canola cytosol, mitochondrion 20.49 28.86
CDY19309 Canola extracellular 20.49 28.86
CDX93103 Canola cytosol 26.5 28.52
CDY02493 Canola mitochondrion 26.15 26.43
CDY25683 Canola cytosol, plastid 26.15 26.15
CDY17035 Canola cytosol 25.09 26.01
CDY47593 Canola cytosol 25.09 26.01
CDX71518 Canola cytosol 24.73 25.83
CDY02422 Canola cytosol 24.38 25.46
CDY52371 Canola cytosol 24.73 25.45
CDX95156 Canola cytosol 24.73 25.27
CDX88517 Canola cytosol 26.5 24.43
CDX87400 Canola extracellular 26.5 23.44
CDX71476 Canola cytosol 19.08 21.69
CDX77059 Canola cytosol 19.08 21.69
CDY04473 Canola cytosol 19.08 21.69
CDY48190 Canola cytosol 19.08 21.69
Protein Annotations
Gene3D:3.60.20.10MapMan:50.3.4GO:A0A078CW97EnsemblPlants:CDX81411ProteinID:CDX81411ProteinID:CDX81411.1
GO:GO:0000502GO:GO:0003674GO:GO:0003824GO:GO:0004298GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005839GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0016787GO:GO:0019538
GO:GO:0051603EnsemblPlantsGene:GSBRNA2T00134993001InterPro:IPR023332InterPro:IPR029055InterPro:Ntn_hydrolases_NPFAM:PF00227
PFscan:PS51475PANTHER:PTHR11599PANTHER:PTHR11599:SF106InterPro:Proteasome_alpha-typeInterPro:Proteasome_sua/bSUPFAM:SSF56235
TMHMM:TMhelixUniParc:UPI0004EEE399SEG:seg:::
Description
BnaC09g08220D
Coordinates
chrLK031824:+:1578746..1580104
Molecular Weight (calculated)
31231.1 Da
IEP (calculated)
10.539
GRAVY (calculated)
-0.144
Length
283 amino acids
Sequence
(BLAST)
001: MGFSVVPKSL CLAPQSIGRR RERWLDTIEQ LQSSPPDGHL FQVEYALEAV RKGNAAVGVR GTDTVVLAVE KKSTPKLQDS IACLDNHVAL ACAGLKADAR
101: VLINKARIDT RYIAGLQQKY TQSGGVRPFG LSTLIVGFDP YSRVPSLYQT DPSGTFSAWK ANSTGRNSNS IREFLEKNYK ETSGQETVKL AIRALLEVVE
201: SGGKNIEVAV MTREESRKKL KLMLLWPRSK QKRQLLKQPR KALKRTSVTQ HSAAISCFSI VISTLIIVFH LLVCLSLSLP PVP
Best Arabidopsis Sequence Match ( AT5G66140.1 )
(BLAST)
001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET
Arabidopsis Description
PAD2Proteasome subunit alpha type-7-B [Source:UniProtKB/Swiss-Prot;Acc:O24616]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.