Factsheet for PGSC0003DMT400015849

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015076
PGSC0003DMT400067737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51260.1	PGSC0003DMT400015076	AT5G22310.1	21798944
AT3G51260.1	PGSC0003DMT400067737	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111450.2.1	Tomato	plastid	100.0	100.0
VIT_03s0038g02300.t01	Wine grape	cytosol	95.58	95.58
KRH69759	Soybean	endoplasmic reticulum, nucleus	94.78	94.78
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	94.38	94.38
VIT_04s0023g03690.t01	Wine grape	cytosol	93.98	93.98
GSMUA_Achr2P03470_001	Banana	cytosol	93.57	93.57
GSMUA_Achr11P...	Banana	cytosol	93.57	93.57
AT5G66140.1	Thale cress	cytosol	91.97	91.6
CDX77988	Canola	cytosol, extracellular	91.97	91.6
Bra036824.1-P	Field mustard	cytosol	91.97	91.6
CDY29009	Canola	cytosol	91.57	91.2
CDX73737	Canola	cytosol, extracellular	91.57	91.2
AT3G51260.1	Thale cress	cytosol	91.16	90.8
Bra012861.1-P	Field mustard	cytosol	91.16	90.8
CDX90655	Canola	cytosol	90.76	90.4
EER97100	Sorghum	cytosol	90.36	90.36
Zm00001d022629_P001	Maize	cytosol	89.96	89.96
Zm00001d006235_P001	Maize	cytosol, extracellular	89.56	89.56
Os09t0538200-01	Rice	cytosol, plastid	89.56	89.56
Zm00001d053217_P001	Maize	cytosol, extracellular	89.16	89.16
Os08t0548900-01	Rice	plastid	89.16	89.16
HORVU5Hr1G083350.1	Barley	cytosol	88.75	88.75
TraesCS7D01G272300.1	Wheat	cytosol	88.75	88.75
TraesCS5A01G329300.1	Wheat	cytosol	88.75	88.75
TraesCS5B01G329400.1	Wheat	cytosol	88.75	88.75
TraesCS7A01G272000.1	Wheat	cytosol	88.75	88.75
TraesCS7B01G170000.1	Wheat	cytosol, golgi, plastid, unclear	88.75	88.75
EES15231	Sorghum	cytosol	88.35	88.35
HORVU7Hr1G057390.2	Barley	cytosol, nucleus, plastid	87.95	77.11
CDX81411	Canola	mitochondrion, plastid	68.67	60.42
PGSC0003DMT400027339	Potato	cytosol	36.14	38.3
PGSC0003DMT400052657	Potato	cytosol	36.14	38.3
PGSC0003DMT400054523	Potato	cytosol	36.14	37.97
PGSC0003DMT400024982	Potato	cytosol, nucleus, peroxisome	35.74	37.55
PGSC0003DMT400007520	Potato	cytosol, extracellular	35.74	36.18
PGSC0003DMT400049388	Potato	cytosol	35.74	35.74
PGSC0003DMT400018852	Potato	cytosol	34.94	35.08
PGSC0003DMT400009588	Potato	cytosol	35.34	32.12
PGSC0003DMT400039976	Potato	cytosol	33.33	30.4
PGSC0003DMT400072226	Potato	cytosol	29.32	29.32
PGSC0003DMT400018521	Potato	cytosol	28.51	28.51

Protein Annotations

EntrezGene:102596046	MapMan:19.2.6.1.1.4	Gene3D:3.60.20.10	ProteinID:ABA40445	ProteinID:ABA40445.1	ProteinID:ABB16990
ProteinID:ABB16990.1	ProteinID:ABB86280	ProteinID:ABB86280.1	ncoils:Coil	EMBL:DQ191644	EMBL:DQ228341
EMBL:DQ284492	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332
InterPro:IPR029055	RefSeq:NP_001275350.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	EnsemblPlantsGene:PGSC0003DMG400006193
PGSC:PGSC0003DMG400006193	EnsemblPlants:PGSC0003DMT400015849	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF106
InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	UniProt:Q38HT8	SMART:SM00948	SUPFAM:SSF56235
MEROPS:T01.974	UniParc:UPI00005D3B5D	SEG:seg	:	:	:

Description

Proteasome subunit alpha type [Source:PGSC_GENE;Acc:PGSC0003DMG400006193]

Coordinates

chr1:+:87397428..87400764

Molecular Weight (calculated)

27100.3 Da

IEP (calculated)

7.619

GRAVY (calculated)

-0.322

Length

249 amino acids

Sequence
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYAMEAVRKG NAAVGVRGTD TVVLGVEKKS TPKLQDSRSV RKIVNLDDHI ALACAGLKAD ARVLVNKARI ECQSHRLTVE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIIGFDPH TGVPSLYQTD PSGTFSAWKA NATGRNSNST REFLEKNYKE TSGQETVKLA IRALLEVVES
201: GGKNIEVAVM TKEHGLKQLE EAEIDAIVAE IEAEKAAAEA AKKAPPKET

Best Arabidopsis Sequence Match ( AT5G66140.1 )
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET

Arabidopsis Description

PAD2Proteasome subunit alpha type-7-B [Source:UniProtKB/Swiss-Prot;Acc:O24616]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.