Factsheet for PGSC0003DMT400018852

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081700.1.1	Tomato	extracellular	99.19	99.19
KRH00322	Soybean	cytosol	93.15	92.4
KRH65617	Soybean	nucleus	92.74	92.0
KRH76017	Soybean	cytosol	92.74	92.0
KRH49455	Soybean	endoplasmic reticulum, nucleus	92.34	91.6
VIT_10s0042g00070.t01	Wine grape	cytosol	91.53	90.8
PGSC0003DMT400049388	Potato	cytosol	89.92	89.56
GSMUA_Achr7P21280_001	Banana	cytosol	80.65	87.34
GSMUA_Achr6P02000_001	Banana	cytosol	65.73	84.02
GSMUA_Achr4P00300_001	Banana	cytosol	88.71	82.4
PGSC0003DMT400024982	Potato	cytosol, nucleus, peroxisome	39.52	41.35
PGSC0003DMT400054523	Potato	cytosol	39.52	41.35
PGSC0003DMT400015849	Potato	cytosol	35.08	34.94
PGSC0003DMT400027339	Potato	cytosol	31.85	33.62
PGSC0003DMT400052657	Potato	cytosol	31.85	33.62
PGSC0003DMT400007520	Potato	cytosol, extracellular	31.45	31.71
PGSC0003DMT400009588	Potato	cytosol	34.27	31.02
PGSC0003DMT400039976	Potato	cytosol	33.06	30.04
PGSC0003DMT400072226	Potato	cytosol	29.44	29.32
PGSC0003DMT400018521	Potato	cytosol	28.63	28.51

Protein Annotations

EntrezGene:102577646	MapMan:19.2.6.1.1.3	Gene3D:3.60.20.10	ProteinID:ABA40454	ProteinID:ABA40454.1	ProteinID:ABB16998
ProteinID:ABB16998.1	EMBL:DQ191653	EMBL:DQ228349	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	RefSeq:NP_001275440.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	EnsemblPlantsGene:PGSC0003DMG400007308	PGSC:PGSC0003DMG400007308	EnsemblPlants:PGSC0003DMT400018852	ScanProsite:PS00388	PFscan:PS51475
PANTHER:PTHR11599	PANTHER:PTHR11599:SF13	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha4
UniProt:Q38HT0	SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.973	UniParc:UPI00005D3B64	SEG:seg

Description

Proteasome subunit alpha type [Source:PGSC_GENE;Acc:PGSC0003DMG400007308]

Coordinates

chr2:+:37474400..37475693

Molecular Weight (calculated)

27140.3 Da

IEP (calculated)

5.409

GRAVY (calculated)

-0.256

Length

248 amino acids

Sequence
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLVGEKK VTSKLLQTST SSEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTFA
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KNYGFQLYMS DPSGNYGGWK AAAIGANNQA AQSILKQDYK DDITREEAVQ LALKVLGKTM
201: DSTSLTSEKL ELAEVFLSNG KVKYQACSPE TLNKMLVSAG LTQPTAEE

Best Arabidopsis Sequence Match ( AT3G22110.1 )
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SAEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTFM
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS

Arabidopsis Description

PAC1Proteasome subunit alpha type-4-A [Source:UniProtKB/Swiss-Prot;Acc:O81148]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.