Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009588 | Potato | cytosol | 88.64 | 88.32 |
| VIT_18s0001g12760.t01 | Wine grape | cytosol | 84.62 | 81.34 |
| CDY21248 | Canola | cytosol | 40.29 | 78.57 |
| KRH05846 | Soybean | cytosol, nucleus | 80.95 | 77.82 |
| KRH38836 | Soybean | cytosol, nucleus | 80.95 | 77.54 |
| Bra035332.1-P | Field mustard | cytosol | 76.56 | 77.12 |
| CDY02422 | Canola | cytosol | 76.56 | 77.12 |
| CDX71518 | Canola | cytosol | 76.19 | 76.75 |
| KRH15173 | Soybean | cytosol, nucleus | 80.95 | 76.74 |
| CDY52371 | Canola | cytosol | 77.29 | 76.73 |
| Bra027456.1-P | Field mustard | cytosol | 76.92 | 76.36 |
| CDX95156 | Canola | cytosol | 77.29 | 76.17 |
| Bra014068.1-P | Field mustard | cytosol | 75.09 | 75.93 |
| CDY17035 | Canola | cytosol | 75.46 | 75.46 |
| CDY47593 | Canola | cytosol | 75.09 | 75.09 |
| AT5G42790.1 | Thale cress | cytosol | 76.19 | 74.82 |
| AT1G47250.1 | Thale cress | cytosol | 75.46 | 74.37 |
| GSMUA_Achr10P... | Banana | cytosol | 71.06 | 73.21 |
| Os02t0133800-01 | Rice | plastid | 69.6 | 70.37 |
| Zm00001d015180_P001 | Maize | extracellular, mitochondrion, plasma membrane | 68.5 | 68.25 |
| EES04466 | Sorghum | cytosol | 66.67 | 67.41 |
| KRH20407 | Soybean | cytosol | 37.0 | 66.01 |
| HORVU6Hr1G017500.1 | Barley | cytosol | 69.6 | 65.97 |
| TraesCS6A01G097800.1 | Wheat | unclear | 69.23 | 65.62 |
| TraesCS6B01G126000.1 | Wheat | cytosol | 69.23 | 65.4 |
| TraesCS6D01G084800.1 | Wheat | golgi | 68.86 | 65.28 |
| PGSC0003DMT400024982 | Potato | cytosol, nucleus, peroxisome | 31.5 | 36.29 |
| PGSC0003DMT400054523 | Potato | cytosol | 31.5 | 36.29 |
| PGSC0003DMT400052657 | Potato | cytosol | 28.94 | 33.62 |
| PGSC0003DMT400015849 | Potato | cytosol | 30.4 | 33.33 |
| PGSC0003DMT400027339 | Potato | cytosol | 28.57 | 33.19 |
| PGSC0003DMT400018852 | Potato | cytosol | 30.04 | 33.06 |
| PGSC0003DMT400049388 | Potato | cytosol | 29.67 | 32.53 |
| PGSC0003DMT400007520 | Potato | cytosol, extracellular | 28.94 | 32.11 |
| PGSC0003DMT400018521 | Potato | cytosol | 27.11 | 29.72 |
| PGSC0003DMT400072226 | Potato | cytosol | 27.11 | 29.72 |
Protein Annotations
| EntrezGene:102592412 | EntrezGene:102597919 | MapMan:19.2.6.1.1.6 | Gene3D:3.60.20.10 | GO:GO:0000502 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0019773 | GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 | UniProt:M1B931 | InterPro:Ntn_hydrolases_N |
| PFAM:PF00227 | PFAM:PF10584 | EnsemblPlantsGene:PGSC0003DMG400015462 | PGSC:PGSC0003DMG400015462 | EnsemblPlants:PGSC0003DMT400039976 | ScanProsite:PS00388 |
| PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF12 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_alpha1 | InterPro:Proteasome_asu_N |
| InterPro:Proteasome_sua/b | SMART:SM00948 | SUPFAM:SSF56235 | MEROPS:T01.976 | UniParc:UPI0002965F08 | RefSeq:XP_006341960.1 |
| RefSeq:XP_006342581.1 | SEG:seg | : | : | : | : |
Description
Proteasome subunit alpha type [Source:PGSC_GENE;Acc:PGSC0003DMG400015462]
Coordinates
chr12:-:56927678..56931205
Molecular Weight (calculated)
29664.9 Da
IEP (calculated)
5.180
GRAVY (calculated)
-0.225
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRNQYDTDV TTWSPAGRLF QVEYAMEAVK QGSAAIGLRS KTHVILACVN KANSELSSHQ KKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ECINYGYSYE
101: SALPVGRLVV QLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQSFA IGSRSQAAKT YLERRFENFT DSSRGSLLKD ALFALRETLQ
201: GEKLTSTNCT VAVVGVGEAF HMLDKETIQG LINEFELAGE EDPAATTDAA ADIESAVPEA GAPTDKGAAS MDV
101: SALPVGRLVV QLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQSFA IGSRSQAAKT YLERRFENFT DSSRGSLLKD ALFALRETLQ
201: GEKLTSTNCT VAVVGVGEAF HMLDKETIQG LINEFELAGE EDPAATTDAA ADIESAVPEA GAPTDKGAAS MDV
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM
Arabidopsis Description
PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.