Factsheet for GSMUA_Achr10P20580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21248	Canola	cytosol	40.38	76.43
Os02t0133800-01	Rice	plastid	76.98	75.56
Bra014068.1-P	Field mustard	cytosol	76.23	74.81
CDY17035	Canola	cytosol	76.23	73.99
CDY47593	Canola	cytosol	75.85	73.63
PGSC0003DMT400009588	Potato	cytosol	75.85	73.36
AT5G42790.1	Thale cress	cytosol	76.23	72.66
AT1G47250.1	Thale cress	cytosol	75.85	72.56
Bra035332.1-P	Field mustard	cytosol	73.96	72.32
CDX71518	Canola	cytosol	73.96	72.32
CDY02422	Canola	cytosol	73.96	72.32
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	74.72	72.26
CDY52371	Canola	cytosol	74.72	72.0
Bra027456.1-P	Field mustard	cytosol	74.72	72.0
HORVU6Hr1G017500.1	Barley	cytosol	78.11	71.88
TraesCS6A01G097800.1	Wheat	unclear	78.11	71.88
TraesCS6D01G084800.1	Wheat	golgi	78.11	71.88
CDX95156	Canola	cytosol	75.09	71.84
TraesCS6B01G126000.1	Wheat	cytosol	78.11	71.63
VIT_18s0001g12760.t01	Wine grape	cytosol	76.6	71.48
EES04466	Sorghum	cytosol	72.45	71.11
PGSC0003DMT400039976	Potato	cytosol	73.21	71.06
KRH38836	Soybean	cytosol, nucleus	75.09	69.82
KRH05846	Soybean	cytosol, nucleus	74.34	69.37
KRH15173	Soybean	cytosol, nucleus	74.72	68.75
Solyc04g080590.2.1	Tomato	extracellular	75.85	67.91
KRH20407	Soybean	cytosol	33.58	58.17
GSMUA_Achr11P...	Banana	peroxisome	32.45	36.29
GSMUA_Achr10P...	Banana	peroxisome	32.45	36.29
GSMUA_Achr8P13980_001	Banana	cytosol	31.32	35.32
GSMUA_Achr5P19360_001	Banana	cytosol	30.19	34.04
GSMUA_Achr7P21280_001	Banana	cytosol	29.06	33.62
GSMUA_Achr11P...	Banana	cytosol	30.94	32.93
GSMUA_Achr2P03470_001	Banana	cytosol	30.57	32.53
GSMUA_Achr10P...	Banana	cytosol	29.43	31.71
GSMUA_Achr6P11610_001	Banana	cytosol	28.68	30.89
GSMUA_Achr8P23960_001	Banana	cytosol	28.68	30.52
GSMUA_Achr4P10040_001	Banana	cytosol	28.68	30.52
GSMUA_Achr4P00300_001	Banana	cytosol	29.81	29.59
GSMUA_Achr6P02000_001	Banana	cytosol	20.38	27.84
GSMUA_Achr6P10850_001	Banana	mitochondrion	31.7	27.54
GSMUA_Achr3P02110_001	Banana	cytosol	12.45	24.09

Protein Annotations

MapMan:19.2.6.1.1.6	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
EnsemblPlantsGene:GSMUA_Achr10G20580_001	EnsemblPlants:GSMUA_Achr10P20580_001	EnsemblPlants:GSMUA_Achr10T20580_001	InterPro:IPR023332	InterPro:IPR029055	UniProt:M0RJY3
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599
PANTHER:PTHR11599:SF12	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha1	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948
SUPFAM:SSF56235	UniParc:UPI000294E390	SEG:seg	:	:	:

Description

Proteasome subunit alpha type-1-A [Source:GMGC_GENE;Acc:GSMUA_Achr10G20580_001]

Coordinates

chr10:-:26498430..26501860

Molecular Weight (calculated)

29304.5 Da

IEP (calculated)

5.180

GRAVY (calculated)

-0.209

Length

265 amino acids

Sequence
(BLAST)

001: MFRNQYDTDV TTWSPAGRLF QVEYAMEAVK QGAAAVGLRS TSHVVLATVN KAASDLSSHQ RKVFKIDDHI GVAIAGLTAD GRVLSRYLRN ECINHAFVYE
101: SPLPVSRLVV RLADKAQVCT QRSWKRPYGV GLLVAGLDET GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YMERRFEAFN NYSRDELIKD AIFAIRETLQ
201: GEKLTSSICT VAIVGIDEPF HVIDQKIIQE VIDSVEIKED AAAAADQAPA QDDEDKSSEA APMDI

Best Arabidopsis Sequence Match ( AT5G42790.1 )
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM

Arabidopsis Description

PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.