Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52371 | Canola | cytosol | 97.47 | 98.18 |
| Bra027456.1-P | Field mustard | cytosol | 97.11 | 97.82 |
| CDX71518 | Canola | cytosol | 93.5 | 95.57 |
| CDY02422 | Canola | cytosol | 93.5 | 95.57 |
| AT5G42790.1 | Thale cress | cytosol | 94.58 | 94.24 |
| CDY17035 | Canola | cytosol | 92.78 | 94.14 |
| CDY47593 | Canola | cytosol | 92.78 | 94.14 |
| CDY21248 | Canola | cytosol | 45.13 | 89.29 |
| KRH38836 | Soybean | cytosol, nucleus | 81.59 | 79.3 |
| VIT_18s0001g12760.t01 | Wine grape | cytosol | 81.23 | 79.23 |
| KRH05846 | Soybean | cytosol, nucleus | 80.87 | 78.87 |
| KRH15173 | Soybean | cytosol, nucleus | 81.59 | 78.47 |
| PGSC0003DMT400009588 | Potato | cytosol | 76.9 | 77.74 |
| PGSC0003DMT400039976 | Potato | cytosol | 76.17 | 77.29 |
| GSMUA_Achr10P... | Banana | cytosol | 71.84 | 75.09 |
| Solyc04g080590.2.1 | Tomato | extracellular | 77.62 | 72.64 |
| Os02t0133800-01 | Rice | plastid | 67.87 | 69.63 |
| KRH20407 | Soybean | cytosol | 38.27 | 69.28 |
| EES04466 | Sorghum | cytosol | 66.06 | 67.78 |
| Zm00001d015180_P001 | Maize | extracellular, mitochondrion, plasma membrane | 66.79 | 67.52 |
| TraesCS6A01G097800.1 | Wheat | unclear | 67.51 | 64.93 |
| TraesCS6B01G126000.1 | Wheat | cytosol | 67.51 | 64.71 |
| HORVU6Hr1G017500.1 | Barley | cytosol | 67.15 | 64.58 |
| TraesCS6D01G084800.1 | Wheat | golgi | 66.79 | 64.24 |
| CDY26894 | Canola | cytosol | 30.69 | 36.17 |
| CDY22253 | Canola | cytosol | 30.69 | 36.17 |
| CDX68003 | Canola | cytosol, extracellular | 30.69 | 36.17 |
| CDX79306 | Canola | cytosol | 30.69 | 36.17 |
| CDY08208 | Canola | peroxisome | 30.69 | 34.84 |
| CDY51800 | Canola | peroxisome | 30.69 | 34.0 |
| CDY29009 | Canola | cytosol | 30.32 | 33.6 |
| CDX73737 | Canola | cytosol, extracellular | 30.32 | 33.6 |
| CDX77988 | Canola | cytosol, extracellular | 30.32 | 33.6 |
| CDX90655 | Canola | cytosol | 30.32 | 33.6 |
| CDY66240 | Canola | extracellular | 23.83 | 32.51 |
| CDY37382 | Canola | cytosol | 23.1 | 31.84 |
| CDY18045 | Canola | cytosol | 28.16 | 31.71 |
| CDY33398 | Canola | cytosol, extracellular | 28.16 | 31.71 |
| CDY02493 | Canola | mitochondrion | 31.77 | 31.43 |
| CDY69258 | Canola | cytosol, mitochondrion | 23.47 | 31.25 |
| CDY50408 | Canola | cytosol, extracellular | 27.44 | 31.15 |
| CDY25683 | Canola | cytosol, plastid | 31.77 | 31.1 |
| CDY39501 | Canola | cytosol, mitochondrion | 22.38 | 30.85 |
| CDY19309 | Canola | extracellular | 22.38 | 30.85 |
| CDX93103 | Canola | cytosol | 28.16 | 29.66 |
| CDY04473 | Canola | cytosol | 26.35 | 29.32 |
| CDX77059 | Canola | cytosol | 26.35 | 29.32 |
| CDY48190 | Canola | cytosol | 26.35 | 29.32 |
| CDX71476 | Canola | cytosol | 26.35 | 29.32 |
| CDX88517 | Canola | cytosol | 30.69 | 27.69 |
| CDX87400 | Canola | extracellular | 30.69 | 26.56 |
| CDX81411 | Canola | mitochondrion, plastid | 25.27 | 24.73 |
Protein Annotations
| MapMan:19.2.6.1.1.6 | Gene3D:3.60.20.10 | GO:A0A078E185 | EnsemblPlants:CDX95156 | ProteinID:CDX95156 | ProteinID:CDX95156.1 |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 | GO:GO:0051603 | EnsemblPlantsGene:GSBRNA2T00100720001 | InterPro:IPR023332 |
| InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 |
| PANTHER:PTHR11599 | PANTHER:PTHR11599:SF12 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_alpha1 | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b |
| SMART:SM00948 | SUPFAM:SSF56235 | UniParc:UPI0004EECA4B | SEG:seg | : | : |
Description
BnaC09g17140D
Coordinates
chrLK031887:+:113849..115963
Molecular Weight (calculated)
30178.4 Da
IEP (calculated)
4.853
GRAVY (calculated)
-0.289
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ KKIFKVDDHI GVAIAGLTAD GRVLSRYMRS EAINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VSVLGVGEPF HFLDQETIQK VIDTFEKVPE DEAGEAEAEA EAEAAAAAPA EQGGGGAGDQ DVAPMEM
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VSVLGVGEPF HFLDQETIQK VIDTFEKVPE DEAGEAEAEA EAEAAAAAPA EQGGGGAGDQ DVAPMEM
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM
Arabidopsis Description
PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.