CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39501	Canola	cytosol, mitochondrion	99.5	99.5
CDY69258	Canola	cytosol, mitochondrion	92.54	89.42
CDY66240	Canola	extracellular	87.56	86.7
CDY37382	Canola	cytosol	80.6	80.6
GSMUA_Achr6P02000_001	Banana	cytosol	77.61	80.41
AT3G22110.1	Thale cress	cytosol, mitochondrion	95.02	76.4
KRH00322	Soybean	cytosol	90.55	72.8
KRH49455	Soybean	endoplasmic reticulum, nucleus	89.55	72.0
VIT_10s0042g00070.t01	Wine grape	cytosol	89.05	71.6
KRH76017	Soybean	cytosol	89.05	71.6
KRH65617	Soybean	nucleus	89.05	71.6
Solyc02g081700.1.1	Tomato	extracellular	87.06	70.56
PGSC0003DMT400049388	Potato	cytosol	84.08	67.87
Zm00001d045194_P001	Maize	extracellular	83.58	67.2
TraesCS7A01G130500.1	Wheat	plastid	82.59	66.4
OQU75904	Sorghum	cytosol	82.59	66.4
TraesCS7B01G030800.1	Wheat	plastid	82.59	66.4
TraesCS7D01G129900.1	Wheat	cytosol	82.59	66.4
Zm00001d036319_P001	Maize	cytosol	82.59	66.4
GSMUA_Achr7P21280_001	Banana	cytosol	75.62	66.38
Os06t0167600-01	Rice	cytosol	80.6	64.8
Os06t0176000-01	Rice	cytosol	80.6	64.8
Os06t0177100-01	Rice	plastid	80.6	64.8
GSMUA_Achr4P00300_001	Banana	cytosol	85.07	64.04
HORVU7Hr1G027220.2	Barley	cytosol	77.11	58.49
CDY21248	Canola	cytosol	20.4	29.29
CDY08208	Canola	peroxisome	33.83	27.87
CDY51800	Canola	peroxisome	33.83	27.2
CDX90655	Canola	cytosol	32.84	26.4
CDY29009	Canola	cytosol	32.84	26.4
CDX73737	Canola	cytosol, extracellular	32.34	26.0
CDX77988	Canola	cytosol, extracellular	32.34	26.0
CDY02493	Canola	mitochondrion	34.83	25.0
CDY25683	Canola	cytosol, plastid	34.83	24.73
CDY47593	Canola	cytosol	31.84	23.44
CDY17035	Canola	cytosol	31.34	23.08
CDY50408	Canola	cytosol, extracellular	27.86	22.95
CDX71518	Canola	cytosol	30.85	22.88
CDY02422	Canola	cytosol	30.85	22.88
CDY18045	Canola	cytosol	27.86	22.76
CDY33398	Canola	cytosol, extracellular	27.86	22.76
CDY52371	Canola	cytosol	30.85	22.55
CDX95156	Canola	cytosol	30.85	22.38
CDX68003	Canola	cytosol, extracellular	25.87	22.13
CDX79306	Canola	cytosol	25.87	22.13
CDY26894	Canola	cytosol	25.87	22.13
CDY22253	Canola	cytosol	25.87	22.13
CDX77059	Canola	cytosol	27.36	22.09
CDY48190	Canola	cytosol	27.36	22.09
CDX71476	Canola	cytosol	27.36	22.09
CDY04473	Canola	cytosol	27.36	22.09
CDX93103	Canola	cytosol	27.86	21.29
CDX81411	Canola	mitochondrion, plastid	28.86	20.49
CDX88517	Canola	cytosol	25.87	16.94
CDX87400	Canola	extracellular	25.87	16.25

Protein Annotations

Gene3D:3.60.20.10	MapMan:50.3.4	GO:A0A078G1G5	UniProt:A0A078G1G5	EnsemblPlants:CDY19309	ProteinID:CDY19309
ProteinID:CDY19309.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00006674001
InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF13	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b
InterPro:Proteasome_subunit_alpha4	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0004EED885	SEG:seg	:

Description

BnaC01g31710DProteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A078G1G5]

Coordinates

chrLK032094:-:686567..687984

Molecular Weight (calculated)

21754.8 Da

IEP (calculated)

7.073

GRAVY (calculated)

-0.261

Length

201 amino acids

Sequence
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SSEKMYKIDD HVACAVAGIM SDANILINTA RQLVQSLWWD
101: KNHGGNYGGW KAAAVGANNQ AAQSILKQDY KDDATREEAV ELALKVLSKT MDSTSLTSEK LELAEVFLTP SGSVKYHVHS SDSLTKLLVK HGVTQPAAES
201: S

Best Arabidopsis Sequence Match ( AT4G15165.1 )
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILAK DGVVLVGEKK VTSKLLQTSS SMEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRWDRN
101: HGFQLYMSDP SGNYGGWQAA AVGANNQAAQ SILKQDYKDD ATREEVVQLA IKVLSKTMDS TSLTAEKLEL AELYLTPSKC VKYHVHSPDS LTKLLVKHGV
201: TQPAAETS

Arabidopsis Description

PAC2Putative proteasome subunit alpha type-4-B [Source:UniProtKB/Swiss-Prot;Acc:F4JJE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.