Factsheet for Os06t0177100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0176000-01	Rice	cytosol	100.0	100.0
Os06t0167600-01	Rice	cytosol	99.6	99.6
TraesCS7A01G130500.1	Wheat	plastid	96.0	96.0
Zm00001d045194_P001	Maize	extracellular	96.0	96.0
TraesCS7D01G129900.1	Wheat	cytosol	96.0	96.0
TraesCS7B01G030800.1	Wheat	plastid	95.6	95.6
OQU75904	Sorghum	cytosol	95.6	95.6
Zm00001d036319_P001	Maize	cytosol	94.8	94.8
HORVU7Hr1G027220.2	Barley	cytosol	89.6	84.53
CDY37382	Canola	cytosol	67.2	83.58
PGSC0003DMT400049388	Potato	cytosol	82.8	83.13
Solyc02g081700.1.1	Tomato	extracellular	82.4	83.06
AT3G22110.1	Thale cress	cytosol, mitochondrion	82.8	82.8
KRH49455	Soybean	endoplasmic reticulum, nucleus	82.8	82.8
GSMUA_Achr7P21280_001	Banana	cytosol	75.6	82.53
Bra023851.1-P	Field mustard	cytosol	82.4	82.4
KRH00322	Soybean	cytosol	82.4	82.4
CDY66240	Canola	extracellular	66.8	82.27
CDY69258	Canola	cytosol, mitochondrion	68.4	82.21
VIT_10s0042g00070.t01	Wine grape	cytosol	82.0	82.0
KRH76017	Soybean	cytosol	82.0	82.0
Bra031328.1-P	Field mustard	cytosol, mitochondrion	82.0	82.0
KRH65617	Soybean	nucleus	82.0	82.0
CDY39501	Canola	cytosol, mitochondrion	65.2	81.09
CDY19309	Canola	extracellular	64.8	80.6
GSMUA_Achr6P02000_001	Banana	cytosol	62.4	80.41
AT4G15165.1	Thale cress	cytosol	66.0	79.33
GSMUA_Achr4P00300_001	Banana	cytosol	82.4	77.15
Bra037085.1-P	Field mustard	cytosol	83.6	67.86
Os11t0615700-01	Rice	peroxisome	37.6	39.66
Os03t0387100-01	Rice	cytosol, plasma membrane	34.0	36.17
Os02t0634900-01	Rice	cytosol, plasma membrane	33.6	35.74
Os08t0548900-01	Rice	plastid	35.6	35.74
Os09t0538200-01	Rice	cytosol, plastid	35.2	35.34
Os01t0811100-01	Rice	cytosol	31.6	31.73
Os03t0180400-01	Rice	cytosol	30.8	31.3
Os05t0490800-01	Rice	cytosol, plasma membrane	30.8	30.92
Os02t0133800-01	Rice	plastid	29.6	27.41
Os07t0614100-01	Rice	cytosol	22.4	22.13

Protein Annotations

EntrezGene:107278560	MapMan:19.2.6.1.1.3	Gene3D:3.60.20.10	EntrezGene:4340285	EMBL:AB026560	ProteinID:BAA95822.1
ProteinID:BAA95832.1	ProteinID:BAF18867.1	ProteinID:BAS96413.1	ProteinID:BAS96428.1	ProteinID:EAZ36014.1	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
EnsemblPlantsGene:Os06g0177100	EnsemblPlants:Os06t0177100-01	UniProt:P0DKK3	UniProt:P0DKK4	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF13	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha4	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0000132453	RefSeq:XP_015643487.1
RefSeq:XP_015643524.1	SEG:seg	:	:	:	:

Description

PAC1AProteasome subunit alpha type 4 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit alpha-3). (Os06t0177100-01)

Coordinates

chr6:+:3870074..3871150

Molecular Weight (calculated)

27045.3 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.166

Length

250 amino acids

Sequence
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSALGVLAA DGVVLVGEKK VTSKLLQTSR SAEKMYKIDS HLACAVAGIM SDANILLNTA RLHAQRYALS
101: YQEPIPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYSGWK AAAVGANSQA AQSMLKQDYR DGMTREEAVA LALKVLSKTM
201: DSTSLTAEKL ELAEVFLQPG TGEVQYQVCS PEAMGKLLAK AGLSQPAPEA

Best Arabidopsis Sequence Match ( AT3G22110.1 )
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SAEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTFM
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS

Arabidopsis Description

PAC1Proteasome subunit alpha type-4-A [Source:UniProtKB/Swiss-Prot;Acc:O81148]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.