Factsheet for Os09t0538200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0506100-00
Os03t0707600-01
Os04t0382800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51260.1	Os03t0707600-01	AT1G14920.1	21798944
AT3G51260.1	Os03t0707600-01	AT2G01570.1	21798944
AT3G51260.1	Os02t0506100-00	AT5G22310.1	21798944
AT3G51260.1	Os04t0382800-00	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0548900-01	Rice	plastid	97.19	97.19
EER97100	Sorghum	cytosol	97.19	97.19
Zm00001d022629_P001	Maize	cytosol	96.39	96.39
Zm00001d006235_P001	Maize	cytosol, extracellular	96.39	96.39
GSMUA_Achr2P03470_001	Banana	cytosol	91.97	91.97
GSMUA_Achr11P...	Banana	cytosol	91.97	91.97
VIT_03s0038g02300.t01	Wine grape	cytosol	91.57	91.57
VIT_04s0023g03690.t01	Wine grape	cytosol	91.16	91.16
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	91.16	91.16
KRH69759	Soybean	endoplasmic reticulum, nucleus	90.76	90.76
AT5G66140.1	Thale cress	cytosol	90.36	90.0
Solyc01g111450.2.1	Tomato	plastid	89.56	89.56
PGSC0003DMT400015849	Potato	cytosol	89.56	89.56
Bra012861.1-P	Field mustard	cytosol	89.56	89.2
CDX90655	Canola	cytosol	89.16	88.8
AT3G51260.1	Thale cress	cytosol	89.16	88.8
CDY29009	Canola	cytosol	89.16	88.8
CDX77988	Canola	cytosol, extracellular	88.75	88.4
CDX73737	Canola	cytosol, extracellular	88.75	88.4
Bra036824.1-P	Field mustard	cytosol	88.75	88.4
CDX81411	Canola	mitochondrion, plastid	66.67	58.66
Os11t0615700-01	Rice	peroxisome	37.35	39.24
Os02t0634900-01	Rice	cytosol, plasma membrane	36.55	38.72
Os03t0387100-01	Rice	cytosol, plasma membrane	36.14	38.3
Os03t0180400-01	Rice	cytosol	35.34	35.77
Os06t0167600-01	Rice	cytosol	35.34	35.2
Os06t0176000-01	Rice	cytosol	35.34	35.2
Os06t0177100-01	Rice	plastid	35.34	35.2
Os05t0490800-01	Rice	cytosol, plasma membrane	30.52	30.52
Os01t0811100-01	Rice	cytosol	30.12	30.12
Os02t0133800-01	Rice	plastid	31.33	28.89
Os07t0614100-01	Rice	cytosol	27.31	26.88

Protein Annotations

MapMan:19.2.6.1.1.4	Gene3D:3.60.20.10	EntrezGene:4347710	EMBL:AB032061	EMBL:AK242072	ProteinID:BAD34241.1
ProteinID:BAD34378.1	ProteinID:BAF25709.1	ProteinID:BAT09172.1	ncoils:Coil	ProteinID:EAZ45499.1	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
EnsemblPlantsGene:Os09g0538200	EnsemblPlants:Os09t0538200-01	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475
PANTHER:PTHR11599	PANTHER:PTHR11599:SF106	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	UniProt:Q0J006
SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI00003FF56A	RefSeq:XP_015651315.1	SEG:seg	:

Description

20S proteasome alpha4 subunitProteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4). (Os09t0538200-01)

Coordinates

chr9:+:21171690..21173884

Molecular Weight (calculated)

27215.4 Da

IEP (calculated)

8.174

GRAVY (calculated)

-0.352

Length

249 amino acids

Sequence
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGSD TVVLGVEKKS TPKLQDSRSV RKIASLDTHI ALACAGLKAD ARVLINRARV ECQSHRLTVE
101: DAVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TDKPALYQTD PSGTFSAWKA NATGRNSNSM REFLEKNYKE TSGKETIKLA IRALLEVVES
201: GGKNIEIAVM TQKDGLRQLE EAEIDEYVAE IEAEKAAAEA AKKGAPKET

Best Arabidopsis Sequence Match ( AT5G66140.1 )
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET

Arabidopsis Description

PAD2Proteasome subunit alpha type-7-B [Source:UniProtKB/Swiss-Prot;Acc:O24616]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.