Factsheet for Os03t0707600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 10713441
nucleus: 11826299
nucleus: 14756772

mitochondrion: 15069638
plasma membrane: 15069638

gfp PMID: 11826299 doi

H Itoh, M Ueguchi-Tanaka, Y Sato, M Ashikari, M Matsuoka

BioScience Center, Nagoya University, Chikusa, Nagoya 464-8601, Japan.

gfp PMID: 14756772

K Gomi, A Sasaki, H Itoh, M Ueguchi-Tanaka, M Ashikari, H Kitano, M Matsuoka

Bioscience and Biotechnology Center, Nagoya University, Chikusa, Nagoya 464-8601, Japan.

gfp PMID: 10713441 doi

M Ogawa, T Kusano, M Katsumi, H Sano

Nara Institute of Science and Technology, Nara, Japan.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0830000-01
Os02t0139400-01
Os02t0174100-02
Os02t0751300-01
Os04t0663200-01
Os05t0407500-01
Os06t0223700-01
Os06t0663500-00
Os06t0703500-02
Os07t0489800-01
Os07t0498300-01
Os08t0242800-01
Os08t0407600-01
Os08t0509600-01
Os09t0367900-02
Os09t0491532-01
Os12t0274700-01
Os12t0291100-01
Os12t0291200-00
Os12t0291400-01
Os12t0292400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14920.1	Os02t0751300-01	AT1G22160.1	21798944
AT1G14920.1	Os06t0223700-01	AT1G22160.1	21798944
AT1G14920.1	Os08t0407600-01	AT1G22160.1	21798944
AT1G14920.1	Os09t0367900-02	AT1G22160.1	21798944
AT1G14920.1	Os08t0242800-01	AT2G36990.1	21798944
AT1G14920.1	Os05t0407500-01	AT3G05120.1	16709201
AT1G14920.1	Os05t0407500-01	AT3G05120.1	17194763
AT1G14920.1	Os05t0407500-01	AT3G05120.1	17416730
AT1G14920.1	Os05t0407500-01	AT3G05120.1	18827182
AT1G14920.1	Os05t0407500-01	AT3G05120.1	19500306
AT1G14920.1	Os07t0489800-01	AT3G16250.1	21798944
AT1G14920.1	Os04t0663200-01	AT3G51180.1	21798944
AT1G14920.1	Os05t0407500-01	AT3G63010.1	16709201
AT1G14920.1	Os05t0407500-01	AT3G63010.1	17194763
AT1G14920.1	Os05t0407500-01	AT3G63010.1	18827182
AT1G14920.1	Os05t0407500-01	AT3G63010.1	19500306
AT1G14920.1	Os07t0498300-01	AT4G20150.1	21798944
AT1G14920.1	Os05t0407500-01	AT5G27320.1	16709201
AT1G14920.1	Os05t0407500-01	AT5G27320.1	17194763
AT1G14920.1	Os05t0407500-01	AT5G27320.1	18827182
AT1G14920.1	Os05t0407500-01	AT5G27320.1	19500306
AT1G14920.1	Os12t0274700-01	AT5G38420.1	21798944
AT1G14920.1	Os12t0291100-01	AT5G38420.1	21798944
AT1G14920.1	Os12t0291200-00	AT5G38420.1	21798944
AT1G14920.1	Os12t0291400-01	AT5G38420.1	21798944
AT1G14920.1	Os12t0292400-01	AT5G38420.1	21798944
AT2G01570.1	Os02t0139400-01	AT1G27370.1	22942378
AT2G01570.1	Os02t0174100-02	AT1G27370.1	22942378
AT2G01570.1	Os06t0663500-00	AT1G27370.1	22942378
AT2G01570.1	Os06t0703500-02	AT1G27370.1	22942378
AT2G01570.1	Os08t0509600-01	AT2G42200.1	22942378
AT2G01570.1	Os09t0491532-01	AT2G42200.1	22942378
AT2G01570.1	Os05t0407500-01	AT3G05120.1	16709201
AT2G01570.1	Os05t0407500-01	AT3G05120.1	17194763
AT2G01570.1	Os05t0407500-01	AT3G05120.1	17416730
AT2G01570.1	Os05t0407500-01	AT3G05120.1	19500306
AT2G01570.1	Os07t0489800-01	AT3G16250.1	21798944
AT2G01570.1	Os05t0407500-01	AT3G63010.1	16709201
AT2G01570.1	Os05t0407500-01	AT3G63010.1	17194763
AT2G01570.1	Os05t0407500-01	AT3G63010.1	18827182
AT2G01570.1	Os05t0407500-01	AT3G63010.1	19429606
AT2G01570.1	Os05t0407500-01	AT3G63010.1	19500306
AT2G01570.1	Os01t0830000-01	AT4G04770.1	21798944
AT2G01570.1	Os05t0407500-01	AT5G27320.1	16709201
AT2G01570.1	Os05t0407500-01	AT5G27320.1	17194763
AT2G01570.1	Os05t0407500-01	AT5G27320.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G271000.1	Wheat	cytosol	86.56	87.26
HORVU4Hr1G006930.1	Barley	nucleus	86.24	87.22
Zm00001d033680_P001	Maize	nucleus	87.68	86.98
TraesCS4B01G043100.1	Wheat	cytosol	86.4	86.96
TraesCS4D01G040400.1	Wheat	cytosol	86.4	86.68
Zm00001d013465_P001	Maize	cytosol	85.92	85.92
EER93592	Sorghum	cytosol	85.44	85.17
TraesCS4A01G466700.1	Wheat	cytosol, nucleus, peroxisome	42.56	81.6
GSMUA_Achr10P...	Banana	cytosol	55.36	72.38
GSMUA_Achr8P18250_001	Banana	cytosol	53.76	70.15
GSMUA_Achr1P21300_001	Banana	nucleus	52.48	63.57
KRH42544	Soybean	cytosol, nucleus, plastid	52.32	63.25
KRH58636	Soybean	nucleus	52.48	62.72
AT1G14920.1	Thale cress	nucleus	51.52	60.41
CDY36236	Canola	cytosol, nucleus, plastid	52.8	59.35
VIT_01s0011g05260.t01	Wine grape	cytosol	54.24	57.46
Bra024875.1-P	Field mustard	nucleus	52.48	57.24
CDY17662	Canola	cytosol, nucleus, plastid	52.32	57.17
AT2G01570.1	Thale cress	mitochondrion, nucleus	52.64	56.05
CDY04092	Canola	cytosol	46.56	54.49
CDY64837	Canola	cytosol	47.04	54.24
Bra017443.1-P	Field mustard	cytosol	46.88	53.56
Os01t0646300-01	Rice	cytosol	34.4	43.43
Os05t0574900-01	Rice	plasma membrane	27.52	34.4
Os01t0948200-00	Rice	cytosol	24.32	34.39
Os07t0567700-02	Rice	cytosol	22.24	30.42
Os12t0138100-00	Rice	cytosol	22.72	28.86
Os06t0211500-00	Rice	cytosol	8.8	28.8
Os11t0141500-00	Rice	cytosol	22.4	28.46
Os06t0610350-01	Rice	cytosol	20.0	28.34
Os02t0197300-00	Rice	cytosol	18.72	26.23
Os05t0485400-00	Rice	peroxisome	20.96	26.2
Os11t0141700-00	Rice	cytosol	20.48	25.3
Os12t0138200-00	Rice	cytosol	20.64	25.29
Os03t0723000-01	Rice	nucleus	23.36	25.26
Os11t0124300-01	Rice	nucleus, plastid	25.44	24.42
Os12t0122000-01	Rice	plastid	25.6	24.24
Os06t0127800-01	Rice	plastid	23.04	23.34
Os05t0378500-00	Rice	plastid	20.8	23.21
Os04t0432100-00	Rice	nucleus	18.56	23.02
Os05t0378200-00	Rice	cytosol	17.76	20.15
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	4.32	7.65
Os11t0141550-01	Rice	cytosol	0.48	2.33

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	EntrezGene:4333860	ProteinID:AAK50137.1
EMBL:AB030956	ProteinID:ABF98475.1	ProteinID:BAE96289.1	ProteinID:BAF12946.1	ProteinID:BAS85987.1	InterPro:DELLA_N_sf
ProteinID:EEE59780.1	GO:GO:0000003	GO:GO:0000989	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0003712	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009719	GO:GO:0009723	GO:GO:0009737	GO:GO:0009740	GO:GO:0009791
GO:GO:0009863	GO:GO:0009867	GO:GO:0009938	GO:GO:0009987	GO:GO:0010187	GO:GO:0042538
GO:GO:0043565	GO:GO:2000033	GO:GO:2000377	InterPro:IPR005202	InterPro:IPR038088	EnsemblPlantsGene:Os03g0707600
EnsemblPlants:Os03t0707600-01	PFAM:PF03514	PFAM:PF12041	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF47
UniProt:Q7G7J6	SMART:SM01129	InterPro:TF_DELLA	InterPro:TF_DELLA_N	InterPro:TF_GRAS	UniParc:UPI00000A5470
RefSeq:XP_015631543.1	SEG:seg	:	:	:	:

Description

SLENDER RICE1DELLA repressor protein, Gibberellin signaling (Os03t0707600-01)

Coordinates

chr3:+:28512754..28515086

Molecular Weight (calculated)

65409.8 Da

IEP (calculated)

4.954

GRAVY (calculated)

-0.111

Length

625 amino acids

Sequence
(BLAST)

001: MKREYQEAGG SSGGGSSADM GSCKDKVMAG AAGEEEDVDE LLAALGYKVR SSDMADVAQK LEQLEMAMGM GGVSAPGAAD DGFVSHLATD TVHYNPSDLS
101: SWVESMLSEL NAPLPPIPPA PPAARHASTS STVTGGGGSG FFELPAAADS SSSTYALRPI SLPVVATADP SAADSARDTK RMRTGGGSTS SSSSSSSSLG
201: GGASRGSVVE AAPPATQGAA AANAPAVPVV VVDTQEAGIR LVHALLACAE AVQQENFAAA EALVKQIPTL AASQGGAMRK VAAYFGEALA RRVYRFRPAD
301: STLLDAAFAD LLHAHFYESC PYLKFAHFTA NQAILEAFAG CHRVHVVDFG IKQGMQWPAL LQALALRPGG PPSFRLTGVG PPQPDETDAL QQVGWKLAQF
401: AHTIRVDFQY RGLVAATLAD LEPFMLQPEG EADANEEPEV IAVNSVFELH RLLAQPGALE KVLGTVHAVR PRIVTVVEQE ANHNSGSFLD RFTESLHYYS
501: TMFDSLEGGS SGQAELSPPA AGGGGGTDQV MSEVYLGRQI CNVVACEGAE RTERHETLGQ WRNRLGRAGF EPVHLGSNAY KQASTLLALF AGGDGYRVEE
601: KEGCLTLGWH TRPLIATSAW RVAAA

Best Arabidopsis Sequence Match ( AT1G14920.1 )
(BLAST)

001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN

Arabidopsis Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.