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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • cytosol 2
  • nucleus 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, peroxisome, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0242200-01
Os01t0777400-01
Os01t0777600-01
Os01t0874700-01
Os01t0922800-01
Os02t0327000-01
Os03t0122600-01
Os03t0177400-01
Os03t0177500-01
Os03t0177900-01
Os03t0178000-02
Os03t0278200-01
Os03t0433200-00
Os05t0429400-01
Os05t0432200-00
Os06t0108500-01
Os06t0152100-01
Os07t0581366-00
Os07t0586900-01
Os08t0531900-01
Os08t0538700-01
Os10t0323600-01
Os10t0323900-01
Os10t0536100-01
Os11t0124300-01
Os11t0533500-01
Os12t0122000-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54220.1 Os01t0242200-01 AT1G03840.1 17785527
AT3G54220.1 Os07t0581366-00 AT1G03840.1 17785527
AT3G54220.1 Os03t0177400-01 AT1G07920.1 19228333
AT3G54220.1 Os03t0177500-01 AT1G07920.1 19228333
AT3G54220.1 Os03t0177900-01 AT1G07920.1 19228333
AT3G54220.1 Os03t0178000-02 AT1G07920.1 19228333
AT3G54220.1 Os03t0177400-01 AT1G07930.1 19228333
AT3G54220.1 Os03t0177500-01 AT1G07930.1 19228333
AT3G54220.1 Os03t0177900-01 AT1G07930.1 19228333
AT3G54220.1 Os03t0178000-02 AT1G07930.1 19228333
AT3G54220.1 Os01t0777400-01 AT1G27050.1 19228333
AT3G54220.1 Os01t0777600-01 AT1G27050.1 19228333
AT3G54220.1 Os01t0874700-01 AT1G72160.1 19228333
AT3G54220.1 Os05t0429400-01 AT1G72160.1 19228333
AT3G54220.1 Os05t0432200-00 AT1G75750.1 19228333
AT3G54220.1 Os03t0278200-01 AT1G78570.1 19228333
AT3G54220.1 Os02t0327000-01 AT2G01540.1 19228333
AT3G54220.1 Os06t0152100-01 AT2G19760.1 21798944
AT3G54220.1 Os10t0323600-01 AT2G19760.1 21798944
AT3G54220.1 Os10t0323900-01 AT2G19760.1 21798944
AT3G54220.1 Os01t0922800-01 AT2G45660.1 19228333
AT3G54220.1 Os03t0122600-01 AT2G45660.1 19228333
AT3G54220.1 Os06t0108500-01 AT2G45660.1 19228333
AT3G54220.1 Os08t0531900-01 AT2G45660.1 19228333
AT3G54220.1 Os10t0536100-01 AT2G45660.1 19228333
AT3G54220.1 Os08t0538700-01 AT3G12280.1 22921914
AT3G54220.1 Os11t0533500-01 AT3G12280.1 22921914
AT3G54220.1 Os11t0124300-01 AT3G54220.1 17785527
AT3G54220.1 Os12t0122000-01 AT3G54220.1 17785527
AT3G54220.1 Os06t0152100-01 AT4G29350.1 21798944
AT3G54220.1 Os10t0323600-01 AT4G29350.1 21798944
AT3G54220.1 Os10t0323900-01 AT4G29350.1 21798944
AT3G54220.1 Os03t0433200-00 AT4G37650.1 17446396
AT3G54220.1 Os07t0586900-01 AT4G37650.1 17446396
AT3G54220.1 Os03t0433200-00 AT4G37650.1 17785527
AT3G54220.1 Os07t0586900-01 AT4G37650.1 17785527
AT3G54220.1 Os03t0433200-00 AT4G37650.1 18500650
AT3G54220.1 Os07t0586900-01 AT4G37650.1 18500650
AT3G54220.1 Os03t0433200-00 AT4G37650.1 22921914
AT3G54220.1 Os07t0586900-01 AT4G37650.1 22921914
AT3G54220.1 Os06t0152100-01 AT5G56600.1 21798944
AT3G54220.1 Os10t0323600-01 AT5G56600.1 21798944
AT3G54220.1 Os10t0323900-01 AT5G56600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os11t0124300-01 Rice nucleus, plastid 96.97 98.31
HORVU5Hr1G045920.2 Barley cytosol 74.39 83.93
KXG22896 Sorghum cytosol, plasma membrane 66.97 83.87
TraesCS5B01G143100.1 Wheat plastid 80.3 83.07
TraesCS4A01G191300.1 Wheat cytosol 76.97 82.33
TraesCS5A01G144000.1 Wheat plastid 80.76 82.25
TraesCS5D01G148000.1 Wheat plastid 80.91 81.78
Zm00001d052380_P001 Maize plastid 82.42 81.44
TraesCS4B01G124000.1 Wheat plastid 82.42 80.12
TraesCS4D01G122000.1 Wheat plastid 82.27 79.97
Bra007056.1-P Field mustard mitochondrion, plastid 38.18 79.75
OQU82754 Sorghum plastid 83.33 77.36
Zm00001d005029_P001 Maize plastid 78.94 76.84
GSMUA_Achr11P... Banana plastid 56.06 64.46
CDX78219 Canola nucleus, plastid 55.3 60.53
CDX73496 Canola nucleus, plastid 56.36 59.81
GSMUA_Achr8P09400_001 Banana cytosol 58.64 57.59
AT3G54220.1 Thale cress nucleus, plastid 55.91 56.51
GSMUA_Achr5P21440_001 Banana nucleus, plastid 58.79 54.88
Os07t0567700-02 Rice cytosol 36.36 52.52
VIT_08s0056g00050.t01 Wine grape nucleus 60.61 51.15
Solyc10g074680.1.1 Tomato cytosol 58.79 46.97
PGSC0003DMT400043358 Potato cytosol 58.48 46.73
KRH40615 Soybean nucleus, plastid 56.36 45.2
KRH00551 Soybean nucleus, plastid 56.21 44.06
Os01t0948200-00 Rice cytosol 22.88 34.16
Os05t0485400-00 Rice peroxisome 24.85 32.8
Os01t0646300-01 Rice cytosol 22.12 29.49
Os06t0610350-01 Rice cytosol 19.7 29.48
Os02t0197300-00 Rice cytosol 19.85 29.37
Os06t0211500-00 Rice cytosol 7.73 26.7
Os12t0138100-00 Rice cytosol 19.55 26.22
Os05t0574900-01 Rice plasma membrane 19.7 26.0
Os11t0141500-00 Rice cytosol 19.24 25.81
Os03t0707600-01 Rice nucleus 24.24 25.6
Os03t0723000-01 Rice nucleus 21.97 25.09
Os11t0141700-00 Rice cytosol 18.94 24.7
Os12t0138200-00 Rice cytosol 18.94 24.51
Os06t0127800-01 Rice plastid 22.42 23.99
Os04t0432100-00 Rice nucleus 18.18 23.81
Os05t0378200-00 Rice cytosol 16.97 20.33
Os05t0378500-00 Rice plastid 17.12 20.18
Os12t0138166-00 Rice endoplasmic reticulum, extracellular 3.33 6.23
Os11t0141550-01 Rice cytosol 0.76 3.88
Protein Annotations
MapMan:15.5.12MapMan:26.3.1.5EntrezGene:4351362EMBL:AB180961ProteinID:ABA95687.1EMBL:AK243131
ProteinID:BAF29046.1ProteinID:BAT15657.1ncoils:CoilProteinID:EAZ19480.1GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005737GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0008356GO:GO:0009058GO:GO:0009605GO:GO:0009606
GO:GO:0009628GO:GO:0009630GO:GO:0009956GO:GO:0009987GO:GO:0030154GO:GO:0043565
GO:GO:0048366GO:GO:0051457GO:GO:0090610InterPro:IPR005202EnsemblPlantsGene:Os12g0122000EnsemblPlants:Os12t0122000-01
PFAM:PF03514PFscan:PS50985PANTHER:PTHR31636PANTHER:PTHR31636:SF12UniProt:Q2QYF3InterPro:TF_GRAS
UniParc:UPI0000681B3ARefSeq:XP_015620600.1SEG:seg:::
Description
SCARECROW GENESCARECROW. (Os12t0122000-01)
Coordinates
chr12:+:1043608..1047116
Molecular Weight (calculated)
70398.5 Da
IEP (calculated)
6.331
GRAVY (calculated)
-0.176
Length
660 amino acids
Sequence
(BLAST)
001: MGSSSLLLFP SSSSSATHSS YSPSSSSHAI TSLLPPLPSD HHLLLYLDHQ EQHHLAAAMV RKRPASDMDL PPPRRHVTGD LSDVTAAAAG APTLSASAQL
101: PALPTQLPAF HHTDMDLAAP APPAPQQVAA GEGGPPSTAW VDGIIRDIIA SSGAAVSVAQ LIHNVREIIR PCNPDLASIL ELRLRSLLNS DPAPPPPPPS
201: HPALLPPDAT APPPPPTSVA ALPPPPPAQP DKRRREPQCQ EQEPNQPQSP KPPTAEETAA AAAAAAAAAA AAAKERKEEQ RRKQRDEEGL HLLTLLLQCA
301: ESVNADNLDE AHRALLEIAE LATPFGTSTQ RVAAYFAEAM SARLVSSCLG LYAPLPSPSP AGARVHGRVA AAFQVFNGIS PFVKFSHFTA NQAIQEAFER
401: EERVHIIDLD IMQGLQWPGL FHILASRPGG PPRVRLTGLG ASMEALEATG KRLSDFADTL GLPFEFCPVA DKAGNLDPEK LGVTRREAVA VHWLRHSLYD
501: VTGSDSNTLW LIQRLAPKVV TMVEQDLSHS GSFLARFVEA IHYYSALFDS LDASYSEDSP ERHVVEQQLL SREIRNVLAV GGPARTGDVK FGSWREKLAQ
601: SGFRVSSLAG SAAAQAALLL GMFPSDGYTL IEENGALKLG WKDLCLLTAS AWRPIQASGR
Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.