Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 5
- extracellular 1
- nucleus 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plasma membrane:
15069638
plasma membrane: 18260611 plasma membrane: 18557835 vacuole: 18557835 plasma membrane: 19502382 nucleus: 19621931 cytosol: 19685898 plastid: 21433289 nucleus: 23303719 nucleus: 23777608 extracellular: 24083427 golgi: 25047511 nucleus: 26035336 plasma membrane: 27800704 plastid: 27992503 extracellular: 28232208 |
msms PMID:
23777608
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
19685898
doi
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID:
19502382
doi
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
15069638
doi
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID:
23303719
doi
State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
21433289
doi
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID:
24083427
doi
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID:
25047511
doi
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os11t0124300-01 | |
Os12t0122000-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G07920.1 | Os11t0124300-01 | AT3G54220.1 | 19228333 |
AT1G07920.1 | Os12t0122000-01 | AT3G54220.1 | 19228333 |
AT1G07930.1 | Os11t0124300-01 | AT3G54220.1 | 19228333 |
AT1G07930.1 | Os12t0122000-01 | AT3G54220.1 | 19228333 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os03t0177400-01 | Rice | cytosol | 100.0 | 100.0 |
Os03t0177500-01 | Rice | cytosol | 100.0 | 100.0 |
Os03t0178000-02 | Rice | cytosol | 100.0 | 100.0 |
GSMUA_Achr5P24440_001 | Banana | cytosol | 28.19 | 99.21 |
CDY09214 | Canola | cytosol | 35.35 | 98.75 |
KXG20293 | Sorghum | cytosol | 98.66 | 98.66 |
KXG20294 | Sorghum | cytosol | 98.66 | 98.66 |
KXG20296 | Sorghum | cytosol | 98.66 | 98.66 |
KXG20299 | Sorghum | cytosol | 98.66 | 98.66 |
Zm00001d036904_P001 | Maize | cytosol | 98.43 | 98.43 |
Zm00001d046449_P003 | Maize | cytosol | 98.43 | 98.43 |
HORVU5Hr1G051280.1 | Barley | cytosol | 22.82 | 98.08 |
KRG93959 | Soybean | nucleus | 97.99 | 97.99 |
KRH07098 | Soybean | cytosol, mitochondrion, nucleus | 97.76 | 97.76 |
KRH58241 | Soybean | nucleus | 97.54 | 97.54 |
Zm00001d009868_P015 | Maize | cytosol | 97.99 | 97.12 |
Zm00001d009870_P008 | Maize | cytosol | 97.99 | 97.12 |
Zm00001d037873_P010 | Maize | cytosol | 97.99 | 97.12 |
Zm00001d037905_P010 | Maize | cytosol | 97.99 | 97.12 |
KRH57863 | Soybean | nucleus | 97.09 | 97.09 |
Solyc11g069700.1.1 | Tomato | nucleus | 97.09 | 97.09 |
CDY06287 | Canola | cytosol | 49.22 | 96.92 |
Zm00001d037875_P014 | Maize | cytosol | 97.76 | 96.9 |
Zm00001d037877_P014 | Maize | cytosol | 97.76 | 96.9 |
Solyc06g005060.2.1 | Tomato | cytosol | 97.09 | 96.88 |
Solyc06g009970.2.1 | Tomato | extracellular, nucleus, plastid | 97.09 | 96.88 |
PGSC0003DMT400050663 | Potato | cytosol | 96.87 | 96.87 |
VIT_06s0004g03240.t01 | Wine grape | cytosol | 96.87 | 96.87 |
GSMUA_Achr10P... | Banana | cytosol | 61.07 | 96.81 |
HORVU4Hr1G056740.1 | Barley | cytosol | 96.64 | 96.64 |
KRH04781 | Soybean | endoplasmic reticulum | 96.64 | 96.64 |
TraesCS4B01G196900.1 | Wheat | golgi | 96.64 | 96.64 |
TraesCS4D01G197100.1 | Wheat | cytosol | 96.64 | 96.64 |
TraesCS4D01G197200.1 | Wheat | cytosol | 96.64 | 96.64 |
TraesCS5B01G418100.1 | Wheat | cytosol | 96.64 | 96.64 |
TraesCS5B01G418200.1 | Wheat | cytosol | 96.64 | 96.64 |
TraesCS5D01G423300.1 | Wheat | cytosol | 96.64 | 96.64 |
TraesCS5D01G423400.1 | Wheat | cytosol | 96.64 | 96.64 |
Bra031601.1-P | Field mustard | cytosol | 42.73 | 96.46 |
KRH34904 | Soybean | nucleus | 96.64 | 96.43 |
PGSC0003DMT400020968 | Potato | cytosol | 96.42 | 96.42 |
GSMUA_Achr10P... | Banana | cytosol | 60.18 | 96.42 |
CDY67375 | Canola | cytosol | 59.96 | 96.4 |
Solyc06g009960.1.1 | Tomato | cytosol | 88.37 | 96.34 |
Zm00001d037882_P001 | Maize | cytosol | 39.82 | 96.22 |
TraesCS4A01G107600.1 | Wheat | cytosol | 96.2 | 96.2 |
TraesCS4A01G107700.1 | Wheat | cytosol | 96.2 | 96.2 |
TraesCS5A01G415400.1 | Wheat | cytosol | 96.2 | 96.2 |
TraesCS5A01G415600.1 | Wheat | cytosol | 96.2 | 96.2 |
GSMUA_Achr2P19000_001 | Banana | cytosol | 16.55 | 96.1 |
PGSC0003DMT400053547 | Potato | cytosol | 96.2 | 95.98 |
PGSC0003DMT400053553 | Potato | cytosol | 96.2 | 95.98 |
PGSC0003DMT400059830 | Potato | cytosol | 96.2 | 95.98 |
PGSC0003DMT400059832 | Potato | cytosol | 96.2 | 95.98 |
Bra002483.1-P | Field mustard | cytosol | 96.2 | 95.77 |
Bra018669.1-P | Field mustard | cytosol | 96.2 | 95.77 |
Bra031602.1-P | Field mustard | cytosol | 96.2 | 95.77 |
CDX88757 | Canola | cytosol | 85.91 | 95.76 |
VIT_08s0040g02330.t01 | Wine grape | cytosol | 95.75 | 95.75 |
CDY06289 | Canola | cytosol | 54.81 | 95.7 |
CDY09211 | Canola | cytosol | 91.5 | 95.56 |
CDY10804 | Canola | cytosol | 91.5 | 95.56 |
CDY34479 | Canola | cytosol | 91.5 | 95.56 |
CDY61938 | Canola | cytosol | 91.5 | 95.56 |
Bra018242.1-P | Field mustard | cytosol | 95.97 | 95.55 |
Bra020253.1-P | Field mustard | cytosol | 95.97 | 95.55 |
AT1G07920.1 | Thale cress | cytosol | 95.75 | 95.32 |
AT1G07930.1 | Thale cress | cytosol | 95.75 | 95.32 |
AT1G07940.3 | Thale cress | cytosol | 95.75 | 95.32 |
AT5G60390.2 | Thale cress | cytosol | 95.75 | 95.32 |
Bra031605.1-P | Field mustard | cytosol | 91.05 | 95.32 |
CDY22710 | Canola | cytosol | 91.05 | 95.32 |
CDY22711 | Canola | cytosol | 91.05 | 95.32 |
Bra020251.1-P | Field mustard | cytosol | 87.47 | 94.9 |
Bra006661.1-P | Field mustard | cytosol | 95.3 | 94.88 |
HORVU4Hr1G056830.1 | Barley | cytosol | 61.97 | 94.54 |
VIT_13s0019g03920.t01 | Wine grape | cytosol | 96.2 | 94.51 |
OQU75582 | Sorghum | cytosol | 26.17 | 93.6 |
GSMUA_Achr6P04090_001 | Banana | cytosol | 41.16 | 93.4 |
HORVU5Hr1G100200.3 | Barley | mitochondrion | 96.64 | 93.1 |
HORVU5Hr1G100700.3 | Barley | plasma membrane | 96.64 | 92.9 |
HORVU6Hr1G085320.3 | Barley | cytosol | 89.49 | 90.7 |
CDY06288 | Canola | cytosol | 23.27 | 90.43 |
CDY06290 | Canola | cytosol | 23.27 | 90.43 |
CDY67376 | Canola | cytosol | 23.27 | 90.43 |
CDY69678 | Canola | cytosol | 23.27 | 90.43 |
HORVU4Hr1G056820.1 | Barley | plasma membrane | 96.2 | 90.34 |
GSMUA_Achr3P17840_001 | Banana | cytosol | 30.65 | 90.13 |
GSMUA_AchrUn_... | Banana | cytosol | 42.06 | 89.95 |
Zm00001d009887_P001 | Maize | cytosol | 29.31 | 89.73 |
TraesCS4B01G196800.2 | Wheat | golgi | 96.64 | 89.44 |
CDX70032 | Canola | cytosol | 68.46 | 88.95 |
CDX93604 | Canola | cytosol | 91.5 | 88.91 |
CDX95108 | Canola | cytosol, extracellular | 96.2 | 88.3 |
HORVU6Hr1G085370.1 | Barley | cytosol | 89.26 | 88.27 |
GSMUA_Achr7P15510_001 | Banana | cytosol, plasma membrane | 80.09 | 87.75 |
OQU75597 | Sorghum | cytosol | 33.78 | 86.29 |
TraesCS2D01G320300.1 | Wheat | cytosol, nucleus, plastid | 30.43 | 85.53 |
TraesCS2D01G320500.1 | Wheat | cytosol | 69.57 | 84.28 |
VIT_06s0004g03220.t01 | Wine grape | cytosol | 96.87 | 83.59 |
GSMUA_Achr10P... | Banana | cytosol, plastid | 39.15 | 81.4 |
VIT_19s0014g04110.t01 | Wine grape | cytosol | 21.92 | 80.99 |
Bra030707.1-P | Field mustard | cytosol | 96.2 | 72.88 |
CDY58828 | Canola | cytosol | 91.05 | 71.65 |
GSMUA_Achr6P02020_001 | Banana | mitochondrion | 53.47 | 69.08 |
Os02t0456500-01 | Rice | cytosol | 17.0 | 29.34 |
Os04t0270100-01 | Rice | cytosol | 30.43 | 29.06 |
Os03t0851100-01 | Rice | mitochondrion | 27.52 | 27.15 |
Os02t0595700-01 | Rice | plastid | 27.07 | 25.91 |
Os01t0116600-01 | Rice | cytosol | 35.57 | 24.27 |
Os04t0596500-02 | Rice | cytosol | 35.35 | 24.09 |
Os04t0677800-02 | Rice | cytosol | 34.23 | 22.43 |
Protein Annotations
MapMan:17.5.1.1 | Gene3D:2.40.30.10 | Gene3D:3.40.50.300 | EntrezGene:4331810 | EntrezGene:4331811 | EntrezGene:4331812 |
EntrezGene:4331813 | ProteinID:ABF94269.1 | ProteinID:ABF94270.1 | ProteinID:ABF94273.1 | ProteinID:ABF94274.1 | EMBL:AC090484 |
EMBL:AF030517 | EMBL:AK061464 | EMBL:AK072648 | EMBL:AK105030 | ProteinID:BAF11059.1 | ProteinID:BAF11060.1 |
ProteinID:BAF11061.1 | ProteinID:BAF11062.1 | ProteinID:BAS82584.1 | ProteinID:BAS82585.1 | ProteinID:BAS82586.1 | ProteinID:BAS82588.1 |
ProteinID:BAS82589.1 | ProteinID:BAS82591.1 | EMBL:D63580 | EMBL:D63581 | EMBL:D63582 | EMBL:D63583 |
ProteinID:EAZ25788.1 | ProteinID:EAZ25791.1 | ProteinID:EAZ25792.1 | InterPro:EFTu-like_2 | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003746 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006412 |
GO:GO:0006414 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0016787 | GO:GO:0019538 | EMBL:GQ848058 | EMBL:GQ848072 | EMBL:GQ848073 | EMBL:GQ848074 |
InterPro:G_TR_CS | InterPro:IPR000795 | HAMAP:MF_00118_A | UniProt:O64937 | EnsemblPlantsGene:Os03g0177900 | EnsemblPlants:Os03t0177900-01 |
InterPro:P-loop_NTPase | PFAM:PF00009 | PFAM:PF03143 | PFAM:PF03144 | PRINTS:PR00315 | ScanProsite:PS00301 |
PFscan:PS51722 | PANTHER:PTHR23115 | PANTHER:PTHR23115:SF230 | UniProt:Q10QZ6 | SUPFAM:SSF50447 | SUPFAM:SSF50465 |
SUPFAM:SSF52540 | InterPro:TF_GTP-bd_dom | TIGRFAMs:TIGR00483 | InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EF1A/Init_IF2_C | InterPro:Transl_elong_EF1A_euk/arc |
InterPro:Transl_elong_EFTu/EF1A_C | UniParc:UPI000009DFC8 | RefSeq:XP_015629735.1 | RefSeq:XP_015629737.1 | RefSeq:XP_015629802.1 | RefSeq:XP_015629803.1 |
SEG:seg | : | : | : | : | : |
Description
ELONGATION FACTOR 1A3EF-1 alpha. (Os03t0177900-01);Similar to Elongation factor 1-alpha. (Os03t0177900-02);Non-protein coding transcript. (Os03t0177900-03)
Coordinates
chr3:+:4110375..4113589
Molecular Weight (calculated)
49295.8 Da
IEP (calculated)
9.559
GRAVY (calculated)
-0.347
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKEKTHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI VKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGVL KPGMVVTFGP SGLTTEVKSV EMHHEALQEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKEAASFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF AELVTKIDRR SGKELEKEPK FLKNGDAGMV KMIPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKNVE KKDPTGAKVT KAAAKKK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI VKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGVL KPGMVVTFGP SGLTTEVKSV EMHHEALQEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKEAASFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF AELVTKIDRR SGKELEKEPK FLKNGDAGMV KMIPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKNVE KKDPTGAKVT KAAAKKK
001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
Arabidopsis Description
A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.