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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 5
  • extracellular 1
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, extracellular, mitochondrion, nucleus
BaCelLo:cytosol
EpiLoc:extracellular
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plasma membrane: 15069638
plasma membrane: 18260611
plasma membrane: 18557835
vacuole: 18557835
plasma membrane: 19502382
nucleus: 19621931
cytosol: 19685898
plastid: 21433289
nucleus: 23303719
nucleus: 23777608
extracellular: 24083427
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19685898 doi
KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID: 19502382 doi
M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 23303719 doi
Q He, L Chen, Y Xu, W Yu
State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os03t0177400-01 Rice cytosol 100.0 100.0
Os03t0177500-01 Rice cytosol 100.0 100.0
Os03t0178000-02 Rice cytosol 100.0 100.0
GSMUA_Achr5P24440_001 Banana cytosol 28.19 99.21
CDY09214 Canola cytosol 35.35 98.75
KXG20293 Sorghum cytosol 98.66 98.66
KXG20294 Sorghum cytosol 98.66 98.66
KXG20296 Sorghum cytosol 98.66 98.66
KXG20299 Sorghum cytosol 98.66 98.66
Zm00001d036904_P001 Maize cytosol 98.43 98.43
Zm00001d046449_P003 Maize cytosol 98.43 98.43
HORVU5Hr1G051280.1 Barley cytosol 22.82 98.08
KRG93959 Soybean nucleus 97.99 97.99
KRH07098 Soybean cytosol, mitochondrion, nucleus 97.76 97.76
KRH58241 Soybean nucleus 97.54 97.54
Zm00001d009868_P015 Maize cytosol 97.99 97.12
Zm00001d009870_P008 Maize cytosol 97.99 97.12
Zm00001d037873_P010 Maize cytosol 97.99 97.12
Zm00001d037905_P010 Maize cytosol 97.99 97.12
KRH57863 Soybean nucleus 97.09 97.09
Solyc11g069700.1.1 Tomato nucleus 97.09 97.09
CDY06287 Canola cytosol 49.22 96.92
Zm00001d037875_P014 Maize cytosol 97.76 96.9
Zm00001d037877_P014 Maize cytosol 97.76 96.9
Solyc06g005060.2.1 Tomato cytosol 97.09 96.88
Solyc06g009970.2.1 Tomato extracellular, nucleus, plastid 97.09 96.88
PGSC0003DMT400050663 Potato cytosol 96.87 96.87
VIT_06s0004g03240.t01 Wine grape cytosol 96.87 96.87
GSMUA_Achr10P... Banana cytosol 61.07 96.81
HORVU4Hr1G056740.1 Barley cytosol 96.64 96.64
KRH04781 Soybean endoplasmic reticulum 96.64 96.64
TraesCS4B01G196900.1 Wheat golgi 96.64 96.64
TraesCS4D01G197100.1 Wheat cytosol 96.64 96.64
TraesCS4D01G197200.1 Wheat cytosol 96.64 96.64
TraesCS5B01G418100.1 Wheat cytosol 96.64 96.64
TraesCS5B01G418200.1 Wheat cytosol 96.64 96.64
TraesCS5D01G423300.1 Wheat cytosol 96.64 96.64
TraesCS5D01G423400.1 Wheat cytosol 96.64 96.64
Bra031601.1-P Field mustard cytosol 42.73 96.46
KRH34904 Soybean nucleus 96.64 96.43
PGSC0003DMT400020968 Potato cytosol 96.42 96.42
GSMUA_Achr10P... Banana cytosol 60.18 96.42
CDY67375 Canola cytosol 59.96 96.4
Solyc06g009960.1.1 Tomato cytosol 88.37 96.34
Zm00001d037882_P001 Maize cytosol 39.82 96.22
TraesCS4A01G107600.1 Wheat cytosol 96.2 96.2
TraesCS4A01G107700.1 Wheat cytosol 96.2 96.2
TraesCS5A01G415400.1 Wheat cytosol 96.2 96.2
TraesCS5A01G415600.1 Wheat cytosol 96.2 96.2
GSMUA_Achr2P19000_001 Banana cytosol 16.55 96.1
PGSC0003DMT400053547 Potato cytosol 96.2 95.98
PGSC0003DMT400053553 Potato cytosol 96.2 95.98
PGSC0003DMT400059830 Potato cytosol 96.2 95.98
PGSC0003DMT400059832 Potato cytosol 96.2 95.98
Bra002483.1-P Field mustard cytosol 96.2 95.77
Bra018669.1-P Field mustard cytosol 96.2 95.77
Bra031602.1-P Field mustard cytosol 96.2 95.77
CDX88757 Canola cytosol 85.91 95.76
VIT_08s0040g02330.t01 Wine grape cytosol 95.75 95.75
CDY06289 Canola cytosol 54.81 95.7
CDY09211 Canola cytosol 91.5 95.56
CDY10804 Canola cytosol 91.5 95.56
CDY34479 Canola cytosol 91.5 95.56
CDY61938 Canola cytosol 91.5 95.56
Bra018242.1-P Field mustard cytosol 95.97 95.55
Bra020253.1-P Field mustard cytosol 95.97 95.55
AT1G07920.1 Thale cress cytosol 95.75 95.32
AT1G07930.1 Thale cress cytosol 95.75 95.32
AT1G07940.3 Thale cress cytosol 95.75 95.32
AT5G60390.2 Thale cress cytosol 95.75 95.32
Bra031605.1-P Field mustard cytosol 91.05 95.32
CDY22710 Canola cytosol 91.05 95.32
CDY22711 Canola cytosol 91.05 95.32
Bra020251.1-P Field mustard cytosol 87.47 94.9
Bra006661.1-P Field mustard cytosol 95.3 94.88
HORVU4Hr1G056830.1 Barley cytosol 61.97 94.54
VIT_13s0019g03920.t01 Wine grape cytosol 96.2 94.51
OQU75582 Sorghum cytosol 26.17 93.6
GSMUA_Achr6P04090_001 Banana cytosol 41.16 93.4
HORVU5Hr1G100200.3 Barley mitochondrion 96.64 93.1
HORVU5Hr1G100700.3 Barley plasma membrane 96.64 92.9
HORVU6Hr1G085320.3 Barley cytosol 89.49 90.7
CDY06288 Canola cytosol 23.27 90.43
CDY06290 Canola cytosol 23.27 90.43
CDY67376 Canola cytosol 23.27 90.43
CDY69678 Canola cytosol 23.27 90.43
HORVU4Hr1G056820.1 Barley plasma membrane 96.2 90.34
GSMUA_Achr3P17840_001 Banana cytosol 30.65 90.13
GSMUA_AchrUn_... Banana cytosol 42.06 89.95
Zm00001d009887_P001 Maize cytosol 29.31 89.73
TraesCS4B01G196800.2 Wheat golgi 96.64 89.44
CDX70032 Canola cytosol 68.46 88.95
CDX93604 Canola cytosol 91.5 88.91
CDX95108 Canola cytosol, extracellular 96.2 88.3
HORVU6Hr1G085370.1 Barley cytosol 89.26 88.27
GSMUA_Achr7P15510_001 Banana cytosol, plasma membrane 80.09 87.75
OQU75597 Sorghum cytosol 33.78 86.29
TraesCS2D01G320300.1 Wheat cytosol, nucleus, plastid 30.43 85.53
TraesCS2D01G320500.1 Wheat cytosol 69.57 84.28
VIT_06s0004g03220.t01 Wine grape cytosol 96.87 83.59
GSMUA_Achr10P... Banana cytosol, plastid 39.15 81.4
VIT_19s0014g04110.t01 Wine grape cytosol 21.92 80.99
Bra030707.1-P Field mustard cytosol 96.2 72.88
CDY58828 Canola cytosol 91.05 71.65
GSMUA_Achr6P02020_001 Banana mitochondrion 53.47 69.08
Os02t0456500-01 Rice cytosol 17.0 29.34
Os04t0270100-01 Rice cytosol 30.43 29.06
Os03t0851100-01 Rice mitochondrion 27.52 27.15
Os02t0595700-01 Rice plastid 27.07 25.91
Os01t0116600-01 Rice cytosol 35.57 24.27
Os04t0596500-02 Rice cytosol 35.35 24.09
Os04t0677800-02 Rice cytosol 34.23 22.43
Protein Annotations
MapMan:17.5.1.1Gene3D:2.40.30.10Gene3D:3.40.50.300EntrezGene:4331810EntrezGene:4331811EntrezGene:4331812
EntrezGene:4331813ProteinID:ABF94269.1ProteinID:ABF94270.1ProteinID:ABF94273.1ProteinID:ABF94274.1EMBL:AC090484
EMBL:AF030517EMBL:AK061464EMBL:AK072648EMBL:AK105030ProteinID:BAF11059.1ProteinID:BAF11060.1
ProteinID:BAF11061.1ProteinID:BAF11062.1ProteinID:BAS82584.1ProteinID:BAS82585.1ProteinID:BAS82586.1ProteinID:BAS82588.1
ProteinID:BAS82589.1ProteinID:BAS82591.1EMBL:D63580EMBL:D63581EMBL:D63582EMBL:D63583
ProteinID:EAZ25788.1ProteinID:EAZ25791.1ProteinID:EAZ25792.1InterPro:EFTu-like_2GO:GO:0000166GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003746GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006412
GO:GO:0006414GO:GO:0008135GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016787GO:GO:0019538EMBL:GQ848058EMBL:GQ848072EMBL:GQ848073EMBL:GQ848074
InterPro:G_TR_CSInterPro:IPR000795HAMAP:MF_00118_AUniProt:O64937EnsemblPlantsGene:Os03g0177900EnsemblPlants:Os03t0177900-01
InterPro:P-loop_NTPasePFAM:PF00009PFAM:PF03143PFAM:PF03144PRINTS:PR00315ScanProsite:PS00301
PFscan:PS51722PANTHER:PTHR23115PANTHER:PTHR23115:SF230UniProt:Q10QZ6SUPFAM:SSF50447SUPFAM:SSF50465
SUPFAM:SSF52540InterPro:TF_GTP-bd_domTIGRFAMs:TIGR00483InterPro:Transl_B-barrel_sfInterPro:Transl_elong_EF1A/Init_IF2_CInterPro:Transl_elong_EF1A_euk/arc
InterPro:Transl_elong_EFTu/EF1A_CUniParc:UPI000009DFC8RefSeq:XP_015629735.1RefSeq:XP_015629737.1RefSeq:XP_015629802.1RefSeq:XP_015629803.1
SEG:seg:::::
Description
ELONGATION FACTOR 1A3EF-1 alpha. (Os03t0177900-01);Similar to Elongation factor 1-alpha. (Os03t0177900-02);Non-protein coding transcript. (Os03t0177900-03)
Coordinates
chr3:+:4110375..4113589
Molecular Weight (calculated)
49295.8 Da
IEP (calculated)
9.559
GRAVY (calculated)
-0.347
Length
447 amino acids
Sequence
(BLAST)
001: MGKEKTHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI VKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGVL KPGMVVTFGP SGLTTEVKSV EMHHEALQEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKEAASFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF AELVTKIDRR SGKELEKEPK FLKNGDAGMV KMIPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKNVE KKDPTGAKVT KAAAKKK
Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)
001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
Arabidopsis Description
A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.