Factsheet for GSMUA_Achr2P19000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
extracellular 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P21440_001
GSMUA_Achr8P09400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G07920.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G07920.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75582	Sorghum	cytosol	90.91	56.0
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	76.62	55.66
VIT_19s0014g04110.t01	Wine grape	cytosol	84.42	53.72
Zm00001d009887_P001	Maize	cytosol	88.31	46.58
CDY09214	Canola	cytosol	96.1	46.25
OQU75597	Sorghum	cytosol	90.91	40.0
Zm00001d037882_P001	Maize	cytosol	93.51	38.92
Bra031601.1-P	Field mustard	cytosol	96.1	37.37
GSMUA_Achr10P...	Banana	cytosol, plastid	96.1	34.42
GSMUA_Achr5P24440_001	Banana	cytosol	51.95	31.5
CDY06287	Canola	cytosol	74.03	25.11
HORVU5Hr1G051280.1	Barley	cytosol	32.47	24.04
CDY06289	Canola	cytosol	74.03	22.27
GSMUA_Achr6P02020_001	Banana	mitochondrion	98.7	21.97
CDY67375	Canola	cytosol	74.03	20.5
Bra020251.1-P	Field mustard	cytosol	96.1	17.96
KRH58241	Soybean	nucleus	97.4	16.78
KRH07098	Soybean	cytosol, mitochondrion, nucleus	97.4	16.78
VIT_06s0004g03240.t01	Wine grape	cytosol	97.4	16.78
KRH34904	Soybean	nucleus	97.4	16.74
KRH57863	Soybean	nucleus	96.1	16.55
Os03t0177500-01	Rice	cytosol	96.1	16.55
KRH04781	Soybean	endoplasmic reticulum	96.1	16.55
KXG20293	Sorghum	cytosol	96.1	16.55
KRG93959	Soybean	nucleus	96.1	16.55
HORVU4Hr1G056740.1	Barley	cytosol	96.1	16.55
KXG20294	Sorghum	cytosol	96.1	16.55
KXG20296	Sorghum	cytosol	96.1	16.55
KXG20299	Sorghum	cytosol	96.1	16.55
Os03t0177400-01	Rice	cytosol	96.1	16.55
Os03t0177900-01	Rice	plasma membrane	96.1	16.55
Os03t0178000-02	Rice	cytosol	96.1	16.55
TraesCS4A01G107600.1	Wheat	cytosol	96.1	16.55
TraesCS4A01G107700.1	Wheat	cytosol	96.1	16.55
TraesCS4B01G196900.1	Wheat	golgi	96.1	16.55
TraesCS5A01G415400.1	Wheat	cytosol	96.1	16.55
TraesCS5A01G415600.1	Wheat	cytosol	96.1	16.55
TraesCS5B01G418100.1	Wheat	cytosol	96.1	16.55
TraesCS5B01G418200.1	Wheat	cytosol	96.1	16.55
Zm00001d036904_P001	Maize	cytosol	96.1	16.55
Zm00001d046449_P003	Maize	cytosol	96.1	16.55
AT1G07930.1	Thale cress	cytosol	96.1	16.48
AT1G07920.1	Thale cress	cytosol	96.1	16.48
Bra031602.1-P	Field mustard	cytosol	96.1	16.48
AT1G07940.3	Thale cress	cytosol	96.1	16.48
Bra018669.1-P	Field mustard	cytosol	96.1	16.48
Bra018242.1-P	Field mustard	cytosol	96.1	16.48
Bra006661.1-P	Field mustard	cytosol	96.1	16.48
AT5G60390.2	Thale cress	cytosol	96.1	16.48
Bra002483.1-P	Field mustard	cytosol	96.1	16.48
Zm00001d009868_P015	Maize	cytosol	96.1	16.41
Zm00001d009870_P008	Maize	cytosol	96.1	16.41
Zm00001d037873_P010	Maize	cytosol	96.1	16.41
Zm00001d037875_P014	Maize	cytosol	96.1	16.41
Zm00001d037877_P014	Maize	cytosol	96.1	16.41
Zm00001d037905_P010	Maize	cytosol	96.1	16.41
Bra020253.1-P	Field mustard	cytosol	94.81	16.26
HORVU5Hr1G100200.3	Barley	mitochondrion	96.1	15.95
HORVU5Hr1G100700.3	Barley	plasma membrane	96.1	15.91
HORVU4Hr1G056820.1	Barley	plasma membrane	96.1	15.55
TraesCS4B01G196800.2	Wheat	golgi	96.1	15.32
CDY22710	Canola	cytosol	84.42	15.22
CDY22711	Canola	cytosol	84.42	15.22
Bra031605.1-P	Field mustard	cytosol	84.42	15.22
CDX95108	Canola	cytosol, extracellular	96.1	15.2
VIT_06s0004g03220.t01	Wine grape	cytosol	97.4	14.48
HORVU6Hr1G085320.3	Barley	cytosol	81.82	14.29
CDX88757	Canola	cytosol	74.03	14.21
HORVU6Hr1G085370.1	Barley	cytosol	81.82	13.94
CDY10804	Canola	cytosol	74.03	13.32
CDY09211	Canola	cytosol	74.03	13.32
CDY34479	Canola	cytosol	74.03	13.32
CDY61938	Canola	cytosol	74.03	13.32
Bra030707.1-P	Field mustard	cytosol	96.1	12.54
CDX93604	Canola	cytosol	74.03	12.39
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	64.94	12.25
CDY58828	Canola	cytosol	84.42	11.44
GSMUA_Achr1P00050_001	Banana	cytosol	42.86	7.5
GSMUA_Achr9P01930_001	Banana	plastid	23.38	6.98
GSMUA_Achr3P07900_001	Banana	cytosol	37.66	5.46
GSMUA_Achr3P24830_001	Banana	mitochondrion	31.17	5.27
GSMUA_Achr8P06040_001	Banana	mitochondrion	29.87	5.05
GSMUA_Achr4P05390_001	Banana	cytosol	44.16	5.0
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	19.48	4.79
CDX70032	Canola	cytosol	12.99	2.91
GSMUA_Achr6P04090_001	Banana	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0
HORVU4Hr1G056830.1	Barley	cytosol	0.0	0.0
GSMUA_Achr3P17840_001	Banana	cytosol	0.0	0.0
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0
CDY69678	Canola	cytosol	0.0	0.0
CDY67376	Canola	cytosol	0.0	0.0
CDY06288	Canola	cytosol	0.0	0.0
CDY06290	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr2P19000_001	EnsemblPlants:GSMUA_Achr2T19000_001	EnsemblPlantsGene:GSMUA_Achr2G19000_001	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR000795
InterPro:P-loop_NTPase	InterPro:TF_GTP-bd_dom	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	PFAM:PF00009	PFscan:PS51722
PRINTS:PR00315	SUPFAM:SSF52540	UniParc:UPI0002968045	UniProt:M0S991	MapMan:35.1	:

Description

Elongation factor 1-alpha [Source:GMGC_GENE;Acc:GSMUA_Achr2G19000_001]

Coordinates

chr2:-:19219659..19220308

Molecular Weight (calculated)

8852.8 Da

IEP (calculated)

10.175

GRAVY (calculated)

-0.430

Length

77 amino acids

Sequence
(BLAST)

1: MGKEKVHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIPW

Best Arabidopsis Sequence Match ( AT1G07930.2 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVIIMNH PGQIGNGYAP VLDCHTSHIA VKFSEILTKI DRRSGKEIEK
301: EPKFLKNGDA GMVKMTPTKP MVVETFSEYP PLGRFAVRDM RQTVAVGVIK SVDKKDPTGA KVTKAAVKKG AK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.