CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88757	Canola	cytosol	87.17	100.0
CDY06288	Canola	cytosol	25.0	100.0
CDY06290	Canola	cytosol	25.0	100.0
CDY09211	Canola	cytosol	93.04	100.0
CDY10804	Canola	cytosol	93.04	100.0
CDY34479	Canola	cytosol	93.04	100.0
CDY61938	Canola	cytosol	93.04	100.0
CDY67376	Canola	cytosol	25.0	100.0
CDY69678	Canola	cytosol	25.0	100.0
CDY67375	Canola	cytosol	59.57	98.56
CDY22710	Canola	cytosol	90.87	97.89
CDY22711	Canola	cytosol	90.87	97.89
CDY06287	Canola	cytosol	48.26	97.8
CDY06289	Canola	cytosol	53.91	96.88
Bra018669.1-P	Field mustard	cytosol	93.04	95.32
GSMUA_Achr10P...	Banana	cytosol	58.04	94.68
GSMUA_Achr10P...	Banana	cytosol	57.39	94.62
CDX70032	Canola	cytosol	68.91	92.15
KRG93959	Soybean	nucleus	89.35	91.95
KRH58241	Soybean	nucleus	89.35	91.95
KRH07098	Soybean	cytosol, mitochondrion, nucleus	88.91	91.5
Os03t0177400-01	Rice	cytosol	88.91	91.5
Os03t0177500-01	Rice	cytosol	88.91	91.5
Os03t0177900-01	Rice	plasma membrane	88.91	91.5
Os03t0178000-02	Rice	cytosol	88.91	91.5
HORVU4Hr1G056830.1	Barley	cytosol	58.26	91.47
Solyc06g005060.2.1	Tomato	cytosol	88.91	91.29
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	88.91	91.29
KRH34904	Soybean	nucleus	88.7	91.07
KXG20293	Sorghum	cytosol	88.48	91.05
KXG20294	Sorghum	cytosol	88.48	91.05
KXG20296	Sorghum	cytosol	88.48	91.05
KXG20299	Sorghum	cytosol	88.48	91.05
PGSC0003DMT400050663	Potato	cytosol	88.48	91.05
VIT_06s0004g03240.t01	Wine grape	cytosol	88.48	91.05
Zm00001d036904_P001	Maize	cytosol	88.48	91.05
Solyc06g009960.1.1	Tomato	cytosol	81.09	90.98
GSMUA_Achr6P04090_001	Banana	cytosol	38.91	90.86
Solyc11g069700.1.1	Tomato	nucleus	88.26	90.83
CDX95108	Canola	cytosol, extracellular	96.09	90.76
PGSC0003DMT400053547	Potato	cytosol	88.26	90.62
PGSC0003DMT400053553	Potato	cytosol	88.26	90.62
PGSC0003DMT400059830	Potato	cytosol	88.26	90.62
PGSC0003DMT400059832	Potato	cytosol	88.26	90.62
Zm00001d046449_P003	Maize	cytosol	88.04	90.6
KRH04781	Soybean	endoplasmic reticulum	87.83	90.38
KRH57863	Soybean	nucleus	87.83	90.38
PGSC0003DMT400020968	Potato	cytosol	87.83	90.38
VIT_08s0040g02330.t01	Wine grape	cytosol	87.61	90.16
Zm00001d037905_P010	Maize	cytosol	88.04	89.8
GSMUA_Achr5P24440_001	Banana	cytosol	24.78	89.76
HORVU4Hr1G056740.1	Barley	cytosol	87.17	89.71
TraesCS4A01G107600.1	Wheat	cytosol	87.17	89.71
TraesCS4A01G107700.1	Wheat	cytosol	87.17	89.71
TraesCS4B01G196900.1	Wheat	golgi	87.17	89.71
TraesCS5A01G415400.1	Wheat	cytosol	87.17	89.71
TraesCS5A01G415600.1	Wheat	cytosol	87.17	89.71
TraesCS5B01G418100.1	Wheat	cytosol	87.17	89.71
TraesCS5B01G418200.1	Wheat	cytosol	87.17	89.71
Zm00001d009868_P015	Maize	cytosol	87.83	89.58
Zm00001d009870_P008	Maize	cytosol	87.83	89.58
Zm00001d037873_P010	Maize	cytosol	87.83	89.58
GSMUA_Achr3P17840_001	Banana	cytosol	29.57	89.47
Zm00001d037875_P014	Maize	cytosol	87.61	89.36
Zm00001d037877_P014	Maize	cytosol	87.61	89.36
VIT_13s0019g03920.t01	Wine grape	cytosol	87.61	88.57
GSMUA_AchrUn_...	Banana	cytosol	39.78	87.56
HORVU5Hr1G100700.3	Barley	plasma membrane	87.61	86.67
HORVU5Hr1G100200.3	Barley	mitochondrion	87.17	86.42
CDY09214	Canola	cytosol	29.78	85.62
Zm00001d037882_P001	Maize	cytosol	33.91	84.32
HORVU4Hr1G056820.1	Barley	plasma membrane	86.96	84.03
HORVU6Hr1G085320.3	Barley	cytosol	80.43	83.9
TraesCS4B01G196800.2	Wheat	golgi	87.61	83.44
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	72.83	82.11
HORVU6Hr1G085370.1	Barley	cytosol	79.78	81.19
VIT_06s0004g03220.t01	Wine grape	cytosol	88.48	78.57
HORVU5Hr1G051280.1	Barley	cytosol	17.61	77.88
OQU75582	Sorghum	cytosol	21.09	77.6
Zm00001d009887_P001	Maize	cytosol	24.13	76.03
OQU75597	Sorghum	cytosol	28.26	74.29
GSMUA_Achr2P19000_001	Banana	cytosol	12.39	74.03
CDY58828	Canola	cytosol	90.43	73.24
GSMUA_Achr10P...	Banana	cytosol, plastid	33.48	71.63
VIT_19s0014g04110.t01	Wine grape	cytosol	17.39	66.12
GSMUA_Achr6P02020_001	Banana	mitochondrion	48.7	64.74
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	11.74	50.94
CDX96737	Canola	cytosol	32.61	28.96
CDX83874	Canola	endoplasmic reticulum	31.96	28.38
CDY19192	Canola	cytosol	32.17	27.26
CDY21721	Canola	cytosol	33.26	26.56
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	33.26	26.2
CDY22085	Canola	mitochondrion	25.22	25.49
CDX90912	Canola	mitochondrion	25.0	25.39
CDY61091	Canola	cytosol	7.39	25.37
CDY26187	Canola	golgi, vacuole	32.17	25.3
CDY21923	Canola	mitochondrion	25.0	25.22
CDY17978	Canola	mitochondrion	24.78	25.17
CDX82758	Canola	plastid	15.0	24.3
CDX98668	Canola	plastid	13.91	23.1
CDY49022	Canola	plastid	17.17	23.03
CDX78392	Canola	cytosol	31.3	22.93
CDY49485	Canola	plastid	16.96	22.81
CDX70362	Canola	cytosol	32.17	22.73
CDX94002	Canola	plastid	13.91	22.61
CDX78988	Canola	plastid	13.7	20.86
CDY31442	Canola	plastid	14.13	20.83
CDY54570	Canola	plastid	14.13	20.83
CDY40108	Canola	cytosol	32.39	20.72
CDX85751	Canola	cytosol	31.74	20.45
CDY62618	Canola	endoplasmic reticulum, mitochondrion	14.35	17.69

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078DYV6	EnsemblPlants:CDX93604	ProteinID:CDX93604
ProteinID:CDX93604.1	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00156284001	InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144
PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc
InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0004EE22E2	SEG:seg	:	:	:

Description

BnaA06g04440D

Coordinates

chrLK031876:-:904594..907591

Molecular Weight (calculated)

50746.5 Da

IEP (calculated)

9.341

GRAVY (calculated)

-0.259

Length

460 amino acids

Sequence
(BLAST)

001: MSASVLNDVV VFLHLDLLFQ PSRYYLSDFY LAMGKEKFHI NIVVIGHVDS GKSTTTGHLI YKLGGIDKRV IERFEKEAAE MNKRSFKYAW FETTKYYCTV
101: IDAPGHRDFI KNMITGTSQA DCAVLIIDST TGGFEAGISK DGQTREHALL AFTLGVKQMI CCCNKMDATT PKYSKARYDE IIKEVSSYLK KVGYNPDKIP
201: FVPISGFEGD NMIERSTNLD WYKGPTLLEA LDQINEPKRP SDKPLRLPLQ DVYKIGGIGT VPVGRVETGM LKPGMVVTFA PSGLTTEVKS VEMHHESLVE
301: ALPGDNVGFN VKNVAVKDLK RGYVASNSKD DPAKGAANFT SQVIIMNHPG QIGNGYAPVL DCHTSHIAVK FSEILTKIDR RSGKEIEKEP KFLKNGDAGM
401: VKMTPTKPMV VETFSEYPPL GRFAVRDMRQ TVAVGVIKSV DKKDPTGAKV TKAAVKKGAK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.