CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21721	Canola	cytosol	92.81	94.1
CDY19192	Canola	cytosol	83.73	90.06
AT1G18070.3	Thale cress	cytosol	82.71	88.95
CDX83874	Canola	endoplasmic reticulum	76.54	86.29
CDY26187	Canola	golgi, vacuole	85.27	85.13
CDX96737	Canola	cytosol	74.83	84.36
KRH60492	Soybean	cytosol	69.52	80.4
KRH41785	Soybean	cytosol, nucleus	69.35	80.36
HORVU2Hr1G012860.1	Barley	cytosol	61.13	73.31
VIT_17s0000g02860.t01	Wine grape	plastid	64.38	72.45
Solyc06g069020.2.1	Tomato	cytosol, nucleus	65.75	71.91
PGSC0003DMT400014425	Potato	cytosol	59.25	70.47
GSMUA_Achr3P07900_001	Banana	cytosol	62.67	68.93
Os04t0270100-01	Rice	cytosol	54.45	67.95
EES10540	Sorghum	cytosol	62.16	67.47
Zm00001d004172_P005	Maize	cytosol	62.16	67.1
TraesCS2D01G075300.1	Wheat	cytosol	60.79	66.6
TraesCS2B01G091600.1	Wheat	cytosol	60.79	66.6
TraesCS2A01G076700.1	Wheat	cytosol, golgi, nucleus	60.62	66.42
Os02t0456500-01	Rice	cytosol	28.42	64.09
Zm00001d025100_P005	Maize	cytosol	55.82	58.11
CDY06287	Canola	cytosol	17.64	45.37
CDY06289	Canola	cytosol	18.66	42.58
CDY09214	Canola	cytosol	11.64	42.5
CDY67375	Canola	cytosol	19.35	40.65
CDX88757	Canola	cytosol	25.0	36.41
CDY10804	Canola	cytosol	26.2	35.75
CDY61938	Canola	cytosol	26.2	35.75
CDY34479	Canola	cytosol	26.2	35.75
CDY09211	Canola	cytosol	26.2	35.75
CDY22711	Canola	cytosol	25.86	35.36
CDY22710	Canola	cytosol	25.86	35.36
CDX93604	Canola	cytosol	26.2	33.26
CDX95108	Canola	cytosol, extracellular	27.05	32.44
CDY61091	Canola	cytosol	6.85	29.85
CDX70032	Canola	cytosol	17.47	29.65
CDY58828	Canola	cytosol	25.86	26.58
CDY67376	Canola	cytosol	5.14	26.09
CDY69678	Canola	cytosol	5.14	26.09
CDY06288	Canola	cytosol	5.14	26.09
CDY06290	Canola	cytosol	5.14	26.09
CDX78392	Canola	cytosol	27.91	25.96
CDX70362	Canola	cytosol	27.74	24.88
CDY22085	Canola	mitochondrion	19.18	24.62
CDY21923	Canola	mitochondrion	19.18	24.56
CDX90912	Canola	mitochondrion	19.01	24.5
CDY17978	Canola	mitochondrion	18.84	24.28
CDX85751	Canola	cytosol	27.91	22.83
CDY40108	Canola	cytosol	27.91	22.67
CDY49022	Canola	plastid	13.01	22.16
CDY49485	Canola	plastid	12.84	21.93
CDX82758	Canola	plastid	10.1	20.77
CDX98668	Canola	plastid	9.76	20.58
CDY54570	Canola	plastid	10.79	20.19
CDX94002	Canola	plastid	9.76	20.14
CDY31442	Canola	plastid	10.62	19.87
CDX78988	Canola	plastid	9.93	19.21
CDY62618	Canola	endoplasmic reticulum, mitochondrion	9.42	14.75

Protein Annotations

MapMan:17.3.2.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078D0S5	EnsemblPlants:CDX81859	ProteinID:CDX81859
ProteinID:CDX81859.1	ncoils:Coil	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00136805001	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF36	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TMHMM:TMhelix	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI0004EE5FE2	SEG:seg	:	:	:	:

Description

BnaC08g37420D

Coordinates

chrLK031826:-:1135272..1140414

Molecular Weight (calculated)

65153.5 Da

IEP (calculated)

5.283

GRAVY (calculated)

-0.188

Length

584 amino acids

Sequence
(BLAST)

001: MFPIILLLIP FPIKSLFCGN IWGFLSFFFF QLSPVLYLFS QLYVDLEADI RALQLDSAEE NNGVVIPEAH NSDEVEKLDT SEEDLKDKVE ESAPVPDEQQ
101: ASEDHDQEVH HAVHNPAKAK EKAAQEKAAK EEAEEEAEAN KKRHLNVVFI GHVDAGKSTI GGQILFLSGQ VDDRQIQKYE KEAKEKSRES WYMAYIMDTN
201: EEERAKGKTV EVGRAHFETA STRFTILDAP GHKSYVPNMI SGASQADIGV LVISARKGEF ETGYERGGQT REHVQLAKTL GVSKLVVVVN KMDDPTVNWS
301: KERYDEIEQK MVPFLKSSGY NTKKDVVFLP ISGLMGFNMD KRMDPKVCPW FSGPSFFEVL DSIEVPPRDP NGPFRTIFCK VILVCCRLMP IIDKFKDMGT
401: VVMGKVESGS IREGDSLVIM PNKEPVKVVA IYCDEDKVKR AGPGENLRVR ITGIEDEDIL SGFVLSSAVK PVPAVTEFVA QLQILELLDN AIFTAGYKAI
501: LHIHAVVEEC EIIELISQID VKTRKPMKKK ILFVKNGAAV ICRIQVTNSI CVEKFSDFPQ LGRFTLRTEG KTVAVGKVTA LSSA

Best Arabidopsis Sequence Match ( AT1G18070.3 )
(BLAST)

001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRLLTGIDFM NCRMPIIDKF KDMGTVVMGK VESGSIREGD SLVVMPNKEQ VKVVAIYCDE DKVKRAGPGE
401: NLRVRITGIE DEDILSGFVL SSIVNPVPAV TEFVAQLQIL ELLDNAIFTA GYKAILHIHA VVEECEIIEL KSQIDLKTRK PMKKKVLFVK NGAAVVCRIQ
501: VTNSICIEKF SDFPQLGRFT LRTEGKTIAV GKVTELLSSV SSA

Arabidopsis Description

T10F20.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.