CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004172_P005	Maize	cytosol	96.28	95.75
HORVU2Hr1G012860.1	Barley	cytosol	79.74	88.09
TraesCS2D01G075300.1	Wheat	cytosol	83.27	84.05
TraesCS2B01G091600.1	Wheat	cytosol	83.09	83.86
TraesCS2A01G076700.1	Wheat	cytosol, golgi, nucleus	82.9	83.68
Zm00001d025100_P005	Maize	cytosol	86.8	83.24
Os04t0270100-01	Rice	cytosol	72.3	83.12
Solyc03g118990.1.1	Tomato	cytosol	10.22	78.57
GSMUA_Achr3P07900_001	Banana	cytosol	75.28	76.27
KRH41785	Soybean	cytosol, nucleus	70.63	75.4
KRH60492	Soybean	cytosol	70.63	75.25
VIT_17s0000g02860.t01	Wine grape	plastid	68.96	71.48
PGSC0003DMT400014425	Potato	cytosol	63.94	70.06
CDY19192	Canola	cytosol	68.4	67.77
AT1G18070.3	Thale cress	cytosol	67.47	66.85
CDX96737	Canola	cytosol	63.75	66.22
CDX83874	Canola	endoplasmic reticulum	61.52	63.9
CDY21721	Canola	cytosol	67.84	63.37
CDY26187	Canola	golgi, vacuole	68.4	62.91
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	67.47	62.16
Bra016571.1-P	Field mustard	cytosol	63.2	47.95
OQU75582	Sorghum	cytosol	8.92	38.4
EER97380	Sorghum	cytosol	30.67	36.91
KXG20299	Sorghum	cytosol	30.48	36.69
KXG20296	Sorghum	cytosol	30.48	36.69
KXG20294	Sorghum	cytosol	30.48	36.69
KXG20293	Sorghum	cytosol	30.48	36.69
OQU75597	Sorghum	cytosol	11.9	36.57
EES05366	Sorghum	plastid	21.93	25.32
EER90508	Sorghum	mitochondrion	20.63	24.5
EES13106	Sorghum	cytosol	31.78	24.36
EES12776	Sorghum	cytosol	29.74	23.6

Protein Annotations

MapMan:17.3.2.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EntrezGene:8069429	UniProt:C5YDD4	EnsemblPlants:EES10540
ProteinID:EES10540	ProteinID:EES10540.1	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0002184	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006412	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0018444	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF36	EnsemblPlantsGene:SORBI_3006G034500	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	unigene:Sbi.2164	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI0001A86B9D	RefSeq:XP_002446212.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:9797735..9807950

Molecular Weight (calculated)

59024.7 Da

IEP (calculated)

5.349

GRAVY (calculated)

-0.277

Length

538 amino acids

Sequence
(BLAST)

001: MEHDAHAVPP SEDATVDDWA RDDAEPMSVE SGVAPAEVAA ADSGADAPFA PSPSPSAAVA AEGVKEIQSS LQSLDLKTNV ATQEDAHVVE DDVDETKRHL
101: NVVFIGHVDA GKSTTGGQIL FLSGQVDDRT IQKYEKEAKD KSRESWYMAY IMDTNEEERV KGKTVEVGRA HFETEHTRFT ILDAPGHKSY VPNMISGASQ
201: ADIGVLVISA RKGEFETGYE RGGQTREHVL LAKTLGVAKL VVVINKMDEP TVKWSKERYD EIEAKMVPFL KSSGYNVKKD VQFLPISGLV GTNMKTRMDK
301: SICSWWDGPC LFEVLDRIEV PLRDPKGPVR MPIIDKYKDM GTVVMGKIES GTIREGDSLL VMPNKSHVKV VGLNLDESKV RRAGPAENVR VKLSGVEEED
401: VMAGFVLSSV ANPVGAVSEF IAQLQILELL DNAIFTAGYK AVLHIHSVVE ECEIVELIEE IDMKKKKEAD PKKKKPKRKP LFVKNGAIVV CRIQVNNLIC
501: VEKFSDFPQL GRFTLRTEGK TVAVGKVVDV PPAGSPTF

Best Arabidopsis Sequence Match ( AT1G18070.1 )
(BLAST)

001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRMPIIDKFK DMGTVVMGKV ESGSIREGDS LVVMPNKEQV KVVAIYCDED KVKRAGPGEN LRVRITGIED
401: EDILSGFVLS SIVNPVPAVT EFVAQLQILE LLDNAIFTAG YKAILHIHAV VEECEIIELK SQIDLKTRKP MKKKVLFVKN GAAVVCRIQV TNSICIEKFS
501: DFPQLGRFTL RTEGKTIAVG KVTELLSSVS SA

Arabidopsis Description

T10F20.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.