CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001827_P005	Maize	cytosol	84.33	85.18
Os04t0677800-02	Rice	cytosol	71.23	73.31
TraesCS2A01G592500.1	Wheat	cytosol	70.51	72.26
TraesCS2B01G591700.6	Wheat	cytosol	70.66	69.66
HORVU2Hr1G119310.19	Barley	cytosol	66.95	68.21
TraesCS2D01G562000.1	Wheat	cytosol	71.65	61.72
Solyc03g119290.2.1	Tomato	cytosol	46.01	54.93
GSMUA_Achr4P05390_001	Banana	cytosol	53.13	54.85
CDY61091	Canola	cytosol	9.97	52.24
Solyc12g036410.1.1	Tomato	cytosol	43.59	52.04
CDX78392	Canola	cytosol	45.58	50.96
Bra006069.1-P	Field mustard	cytosol	45.58	50.79
CDX85751	Canola	cytosol	51.28	50.42
CDX70362	Canola	cytosol	46.44	50.08
CDY40108	Canola	cytosol	51.0	49.79
EES12776	Sorghum	cytosol	47.86	49.56
Bra028577.1-P	Field mustard	cytosol	50.85	48.9
VIT_03s0017g00530.t01	Wine grape	cytosol	52.85	48.82
AT5G10630.4	Thale cress	cytosol	51.57	48.72
KRH59057	Soybean	cytosol	52.42	46.41
KRH42938	Soybean	cytosol	51.85	46.25
OQU75582	Sorghum	cytosol	7.98	44.8
OQU75597	Sorghum	cytosol	10.11	40.57
EER97380	Sorghum	cytosol	22.36	35.12
KXG20299	Sorghum	cytosol	22.36	35.12
KXG20296	Sorghum	cytosol	22.36	35.12
KXG20294	Sorghum	cytosol	22.36	35.12
KXG20293	Sorghum	cytosol	22.36	35.12
EES10540	Sorghum	cytosol	24.36	31.78
EER90508	Sorghum	mitochondrion	17.09	26.49
EES05366	Sorghum	plastid	16.52	24.89

Protein Annotations

MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EntrezGene:8085873	UniProt:C5YAJ3
EnsemblPlants:EES13106	ProteinID:EES13106	ProteinID:EES13106.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
InterPro:IPR000795	InterPro:IPR001876	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PRINTS:PR00315
ScanProsite:PS01358	PFscan:PS50199	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF219	SMART:SM00547
EnsemblPlantsGene:SORBI_3006G267600	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	unigene:Sbi.9704	InterPro:TF_GTP-bd_dom
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0001A875F6	RefSeq:XP_002448778.1	InterPro:Znf_RanBP2
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:60081119..60085571

Molecular Weight (calculated)

76827.5 Da

IEP (calculated)

8.657

GRAVY (calculated)

-0.211

Length

702 amino acids

Sequence
(BLAST)

001: MCVNHIDSKA GQLGVRDDNR SDFEEPFKIS GMWQCSICTH ENSTDNLSCE LCGVLRDLSL YFNNISEAKD GAKCRHKYSG VSILARSLFT PSSTKSKAIV
101: FSDGFKDSRN TTGNKQATMD ALHKTYMTRK KRHINIVPFK FDTPSPDDMV VTGLKSSRNF RKVDTKVLVK DSVDVTGKKM IDNNILLTEK STSMDPSASV
201: QLDEVGGSSS NVPSSSQNTT LVLDHKLQHL SLESKPKNSK PNIKKATSVS HYKPEPWMLE SEDQEICKQL SLAIVGHVDS GKSTLCGRLR HALGLISKKQ
301: MHKYEKEAKE KGKGSFAYAW AMDESSDERE RGITMTVAVA YFNSEKYRVV LLDSPGHKDF VPNMISGATQ ADAAILVVDA SIGSFEAGMG VNGIGQTKEH
401: SQLIRSFGVE NLIVAVNKMD VVEYSKERFQ SIKSQLGIFL RSCGYKDSSV TWVPLSAMAN ENLVTASSDS RLLSWYNGDC LLKAIDSLPP PHRDVSRPLR
501: LPICDVIASH TLGQVAVCGK VESGGIRTGS KVLVMPSGDI ATVRTIERDS STCSLARAGD NVAIGLHGID PGHIVSGGVL CHPDFPVRVA SHLELKVLVL
601: EITMPILVGL QFELHIHHAR VSARLVKILS SLDQKTGKAL KKMPRLLTAR QAAVVEVKLD KEVCVEEFST LKALGRVFLR SQGNTVAVGI VTRILDQDLN
701: LD

Best Arabidopsis Sequence Match ( AT5G10630.3 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTV ESRCKEPVVS
101: KLAKSLFGSV PSNKPKRAVL CLPEHTNLVM EQGPLPGISR GNIHDLYKAF SSKNSCVSIA PFKFDAPSPD DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS
201: VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM SLIGETENSS DIKIRGPKSQ SKHKPEEWML
301: LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER ERGITMTVAV AYFNSKRHHV VLLDSPGHKD
401: FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN
501: QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS KVMVMPSGDQ GTIRSLERDS QACTIARAGD
601: NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ
701: NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.