Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85751 | Canola | cytosol | 92.91 | 93.56 |
| CDX78392 | Canola | cytosol | 74.83 | 85.67 |
| CDX70362 | Canola | cytosol | 76.77 | 84.79 |
| AT5G10630.4 | Thale cress | cytosol | 84.98 | 82.23 |
| GSMUA_Achr1P00050_001 | Banana | cytosol | 43.12 | 70.45 |
| CDY61091 | Canola | cytosol | 12.38 | 66.42 |
| Solyc03g119290.2.1 | Tomato | cytosol | 49.51 | 60.54 |
| Solyc12g036410.1.1 | Tomato | cytosol | 46.87 | 57.31 |
| VIT_03s0017g00530.t01 | Wine grape | cytosol | 58.83 | 55.66 |
| KRH59057 | Soybean | cytosol | 59.53 | 53.97 |
| GSMUA_Achr4P05390_001 | Banana | cytosol | 50.9 | 53.82 |
| Os04t0596500-02 | Rice | cytosol | 48.96 | 53.66 |
| KRH42938 | Soybean | cytosol | 58.69 | 53.62 |
| Os01t0116600-01 | Rice | cytosol | 48.4 | 53.13 |
| EES12776 | Sorghum | cytosol | 49.79 | 52.8 |
| TraesCS2D01G443300.1 | Wheat | cytosol | 48.4 | 51.18 |
| EES13106 | Sorghum | cytosol | 49.79 | 51.0 |
| TraesCS2B01G465300.1 | Wheat | cytosol | 48.26 | 50.95 |
| TraesCS2A01G444100.1 | Wheat | cytosol | 48.12 | 50.81 |
| TraesCS2A01G592500.1 | Wheat | cytosol | 48.4 | 50.8 |
| Os04t0677800-02 | Rice | cytosol | 48.12 | 50.73 |
| Zm00001d001827_P005 | Maize | cytosol | 47.01 | 48.63 |
| TraesCS2B01G591700.6 | Wheat | cytosol | 47.71 | 48.17 |
| HORVU2Hr1G119310.19 | Barley | cytosol | 45.76 | 47.75 |
| CDY09214 | Canola | cytosol | 10.43 | 46.88 |
| HORVU2Hr1G102800.6 | Barley | cytosol, plastid | 48.54 | 46.23 |
| Zm00001d026213_P001 | Maize | cytosol | 49.79 | 43.13 |
| TraesCS2D01G562000.1 | Wheat | cytosol | 48.12 | 42.45 |
| CDY06287 | Canola | cytosol | 13.21 | 41.85 |
| CDY06289 | Canola | cytosol | 14.46 | 40.62 |
| CDY67375 | Canola | cytosol | 15.58 | 40.29 |
| CDX88757 | Canola | cytosol | 19.89 | 35.66 |
| CDY22710 | Canola | cytosol | 21.0 | 35.36 |
| CDY22711 | Canola | cytosol | 21.0 | 35.36 |
| CDY61938 | Canola | cytosol | 20.58 | 34.58 |
| CDY34479 | Canola | cytosol | 20.58 | 34.58 |
| CDY09211 | Canola | cytosol | 20.58 | 34.58 |
| CDY10804 | Canola | cytosol | 20.58 | 34.58 |
| CDX95108 | Canola | cytosol, extracellular | 21.98 | 32.44 |
| CDX93604 | Canola | cytosol | 20.72 | 32.39 |
| CDX96737 | Canola | cytosol | 22.25 | 30.89 |
| CDY19192 | Canola | cytosol | 22.67 | 30.02 |
| CDX83874 | Canola | endoplasmic reticulum | 21.0 | 29.15 |
| CDY21721 | Canola | cytosol | 22.39 | 27.95 |
| CDX81859 | Canola | endoplasmic reticulum, golgi, plasma membrane | 22.67 | 27.91 |
| CDX70032 | Canola | cytosol | 13.35 | 27.91 |
| CDY26187 | Canola | golgi, vacuole | 22.53 | 27.69 |
| CDX82758 | Canola | plastid | 10.71 | 27.11 |
| CDY58828 | Canola | cytosol | 21.0 | 26.58 |
| CDX90912 | Canola | mitochondrion | 16.41 | 26.05 |
| CDY17978 | Canola | mitochondrion | 16.27 | 25.83 |
| CDY22085 | Canola | mitochondrion | 16.27 | 25.71 |
| CDY21923 | Canola | mitochondrion | 16.27 | 25.66 |
| CDX98668 | Canola | plastid | 9.74 | 25.27 |
| CDY49022 | Canola | plastid | 11.82 | 24.78 |
| CDX94002 | Canola | plastid | 9.74 | 24.73 |
| CDY49485 | Canola | plastid | 11.54 | 24.27 |
| CDX78988 | Canola | plastid | 9.87 | 23.51 |
| CDY31442 | Canola | plastid | 9.87 | 22.76 |
| CDY06290 | Canola | cytosol | 3.62 | 22.61 |
| CDY06288 | Canola | cytosol | 3.62 | 22.61 |
| CDY67376 | Canola | cytosol | 3.62 | 22.61 |
| CDY69678 | Canola | cytosol | 3.62 | 22.61 |
| CDY54570 | Canola | plastid | 9.74 | 22.44 |
| CDY62618 | Canola | endoplasmic reticulum, mitochondrion | 8.62 | 16.62 |
Protein Annotations
| MapMan:16.8.1.2.7 | MapMan:17.3.3.1.2 | Gene3D:2.40.30.10 | Gene3D:3.40.50.300 | GO:A0A078HTN6 | UniProt:A0A078HTN6 |
| EnsemblPlants:CDY40108 | ProteinID:CDY40108 | ProteinID:CDY40108.1 | InterPro:EFTu-like_2 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00069030001 | InterPro:IPR000795 | InterPro:IPR001876 | InterPro:P-loop_NTPase | PFAM:PF00009 | PFAM:PF03143 |
| PFAM:PF03144 | PRINTS:PR00315 | ScanProsite:PS01358 | PFscan:PS50199 | PFscan:PS51722 | PANTHER:PTHR23115 |
| PANTHER:PTHR23115:SF219 | SUPFAM:SSF50447 | SUPFAM:SSF50465 | SUPFAM:SSF52540 | SUPFAM:SSF90209 | InterPro:TF_GTP-bd_dom |
| InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EF1A/Init_IF2_C | InterPro:Transl_elong_EFTu/EF1A_C | UniParc:UPI0004EDDD7B | InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g00220DBnaC02g00220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTN6]
Coordinates
chrLK032463:+:236833..241349
Molecular Weight (calculated)
78568.3 Da
IEP (calculated)
6.878
GRAVY (calculated)
-0.401
Length
719 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRKGLSNFD DYDDGFDDDE DDAYDYDYDV DVDEDEHADE PKEEEVIAKR GIWRCAICTY DNDESMHVCD ICGVIRHPVP GGNKTISNST VEGRCKEPMV
101: SKLAKSLFES NSPKRGVLYQ HEHKNLVLAQ GALPRISRGN IHDLHKAFSS KNLSVSSIAP FKFDAPSPDD LVSNGLKSSR TGSKDSMKKK EKQDSAEQNP
201: LKKGADRSET SFQGIQSFNS LPKAKADKSK ETSSSSKNME VSESLTGTMN NMSLAGETET SRDVKIRSAR SKSNHKPEEW MMLDKESDTL SQLNLAIVGH
301: VDSGKSTLSG RLLHLLGRIS QKQMHKFEKE AKSQGKGSFA YAWALDESAE ERERGITMTV AVAYFNSKRH HVVLLDSPGH KDFVPNMIAG ATQADAAILV
401: IDASIGAFEA GFDNLKGQTR EHARVLRGFG VEQVIVAVNK MDIVGYSKER FELIKQHVGS FLHSCRFKES SLTWIPLSAV ENQNLVASPL ESRLSSWYRG
501: PCLLEAVDSV KSPERDVSKP LLMPICDVVR SSSGQVSACG KLEAGAVRPG SKVMVMPSGD QATVKSLERD SQGCSVARAG DNVAIAVQGI DANQVMAGGV
601: LCHPDYPVSV ATRLELMVLV LEGATPILLG SQLEFHVHHA KEAATVVKLV AMLDPKTGEA TKKSPRCLTA KQSAMLEVSL QYPVCVETFS ESRALGRVFL
701: RSSGRTVAMG RVTRIIQDS
101: SKLAKSLFES NSPKRGVLYQ HEHKNLVLAQ GALPRISRGN IHDLHKAFSS KNLSVSSIAP FKFDAPSPDD LVSNGLKSSR TGSKDSMKKK EKQDSAEQNP
201: LKKGADRSET SFQGIQSFNS LPKAKADKSK ETSSSSKNME VSESLTGTMN NMSLAGETET SRDVKIRSAR SKSNHKPEEW MMLDKESDTL SQLNLAIVGH
301: VDSGKSTLSG RLLHLLGRIS QKQMHKFEKE AKSQGKGSFA YAWALDESAE ERERGITMTV AVAYFNSKRH HVVLLDSPGH KDFVPNMIAG ATQADAAILV
401: IDASIGAFEA GFDNLKGQTR EHARVLRGFG VEQVIVAVNK MDIVGYSKER FELIKQHVGS FLHSCRFKES SLTWIPLSAV ENQNLVASPL ESRLSSWYRG
501: PCLLEAVDSV KSPERDVSKP LLMPICDVVR SSSGQVSACG KLEAGAVRPG SKVMVMPSGD QATVKSLERD SQGCSVARAG DNVAIAVQGI DANQVMAGGV
601: LCHPDYPVSV ATRLELMVLV LEGATPILLG SQLEFHVHHA KEAATVVKLV AMLDPKTGEA TKKSPRCLTA KQSAMLEVSL QYPVCVETFS ESRALGRVFL
701: RSSGRTVAMG RVTRIIQDS
001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTV ESRCKEPVVS
101: KLAKSLFGSV PSNKPKRAVL CLPEHTNLVM EQGPLPGISR GNIHDLYKAF SSKNSCVSIA PFKFDAPSPD DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS
201: VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM SLIGETENSS DIKIRGPKSQ SKHKPEEWML
301: LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER ERGITMTVAV AYFNSKRHHV VLLDSPGHKD
401: FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN
501: QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS KVMVMPSGDQ GTIRSLERDS QACTIARAGD
601: NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ
701: NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS
101: KLAKSLFGSV PSNKPKRAVL CLPEHTNLVM EQGPLPGISR GNIHDLYKAF SSKNSCVSIA PFKFDAPSPD DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS
201: VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM SLIGETENSS DIKIRGPKSQ SKHKPEEWML
301: LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER ERGITMTVAV AYFNSKRHHV VLLDSPGHKD
401: FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN
501: QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS KVMVMPSGDQ GTIRSLERDS QACTIARAGD
601: NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ
701: NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS
Arabidopsis Description
Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.