CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40108	Canola	cytosol	93.56	92.91
Bra028577.1-P	Field mustard	cytosol	94.96	92.88
CDX78392	Canola	cytosol	77.45	88.06
CDX70362	Canola	cytosol	78.71	86.33
AT5G10630.4	Thale cress	cytosol	87.11	83.71
GSMUA_Achr1P00050_001	Banana	cytosol	43.42	70.45
CDY61091	Canola	cytosol	12.46	66.42
Solyc03g119290.2.1	Tomato	cytosol	50.28	61.05
Solyc12g036410.1.1	Tomato	cytosol	47.48	57.65
VIT_03s0017g00530.t01	Wine grape	cytosol	59.66	56.05
GSMUA_Achr4P05390_001	Banana	cytosol	51.82	54.41
KRH42938	Soybean	cytosol	59.24	53.75
KRH59057	Soybean	cytosol	59.66	53.72
Os04t0596500-02	Rice	cytosol	49.02	53.35
EES12776	Sorghum	cytosol	50.28	52.95
Os01t0116600-01	Rice	cytosol	48.46	52.82
EES13106	Sorghum	cytosol	50.42	51.28
TraesCS2A01G592500.1	Wheat	cytosol	49.02	51.09
Os04t0677800-02	Rice	cytosol	48.46	50.73
TraesCS2D01G443300.1	Wheat	cytosol	48.18	50.59
TraesCS2B01G465300.1	Wheat	cytosol	48.04	50.37
TraesCS2A01G444100.1	Wheat	cytosol	47.9	50.22
Zm00001d001827_P005	Maize	cytosol	47.48	48.78
TraesCS2B01G591700.6	Wheat	cytosol	48.46	48.6
HORVU2Hr1G119310.19	Barley	cytosol	46.5	48.19
CDY09214	Canola	cytosol	10.5	46.88
HORVU2Hr1G102800.6	Barley	cytosol, plastid	48.18	45.56
Zm00001d026213_P001	Maize	cytosol	50.0	43.01
TraesCS2D01G562000.1	Wheat	cytosol	48.88	42.82
CDY06287	Canola	cytosol	13.17	41.41
CDY06289	Canola	cytosol	14.29	39.84
CDY67375	Canola	cytosol	15.41	39.57
CDX88757	Canola	cytosol	19.61	34.91
CDY22711	Canola	cytosol	20.73	34.66
CDY22710	Canola	cytosol	20.73	34.66
CDY10804	Canola	cytosol	20.31	33.88
CDY09211	Canola	cytosol	20.31	33.88
CDY61938	Canola	cytosol	20.31	33.88
CDY34479	Canola	cytosol	20.31	33.88
CDX95108	Canola	cytosol, extracellular	21.71	31.83
CDX93604	Canola	cytosol	20.45	31.74
CDX96737	Canola	cytosol	22.41	30.89
CDY19192	Canola	cytosol	22.55	29.65
CDX83874	Canola	endoplasmic reticulum	21.15	29.15
CDY21721	Canola	cytosol	22.55	27.95
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	22.83	27.91
CDX82758	Canola	plastid	11.06	27.82
CDY26187	Canola	golgi, vacuole	22.69	27.69
CDX70032	Canola	cytosol	13.03	27.03
CDX90912	Canola	mitochondrion	16.81	26.49
CDY17978	Canola	mitochondrion	16.81	26.49
CDY22085	Canola	mitochondrion	16.81	26.37
CDY21923	Canola	mitochondrion	16.81	26.32
CDY58828	Canola	cytosol	20.73	26.06
CDX98668	Canola	plastid	10.08	25.99
CDX94002	Canola	plastid	10.08	25.44
CDY49022	Canola	plastid	12.18	25.36
CDY49485	Canola	plastid	11.9	24.85
CDX78988	Canola	plastid	10.22	24.17
CDY31442	Canola	plastid	10.22	23.4
CDY54570	Canola	plastid	10.08	23.08
CDY69678	Canola	cytosol	3.64	22.61
CDY06288	Canola	cytosol	3.64	22.61
CDY67376	Canola	cytosol	3.64	22.61
CDY06290	Canola	cytosol	3.64	22.61
CDY62618	Canola	endoplasmic reticulum, mitochondrion	9.1	17.43

Protein Annotations

MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078D913	EnsemblPlants:CDX85751
ProteinID:CDX85751	ProteinID:CDX85751.1	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00143505001	InterPro:IPR000795
InterPro:IPR001876	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS01358	PFscan:PS50199	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF219	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	SUPFAM:SSF90209	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C
InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0004EE8005	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:

Description

BnaA02g00620D

Coordinates

chrLK031842:-:1535615..1539876

Molecular Weight (calculated)

77803.4 Da

IEP (calculated)

6.818

GRAVY (calculated)

-0.369

Length

714 amino acids

Sequence
(BLAST)

001: MPRKGFSNFD DYDDGFDDDY DYDVDVEEDE HEADEPEEEV VIAKRGLWRC AICTYDNDES MHVCDICGVI RHPVPGGNIT INNNTVEGRC KEPMVSKLAK
101: SLFESNSLKK GVLYQPEHKN LVLAQGALPR ISRGNIHDLH KAFSSKNSSV SSIAPFKFDA PSPDDLVSNG LKSSRTGPKD SMKNKEKQDS AEHNQTSSQG
201: RHDNVGVGGI QSFKSLPKAK ADKSKETSSS SKNMEVSESL TSTMNNMSLT GETETSRDVK IRSAKSKSNH KPEEWMMLDK ESDALSQLNL AIVGHVDSGK
301: STLSGRLLHL LGRISQKQMH KFEKEAKSQG KGSFAYAWAL DESAEERERG ITMTVAVAYF NSKRHHVVLL DSPGHKDFVP NMIAGATQAD AAILVIDASI
401: GAFEAGFDNL KGQTREHARV LRGFGVEQVI VAVNKMDIVG YSKERFELIK QHVGSFLHSC RFKESSLTWI PLSAMENQNL VAAPSESRLS SWYQGPCLLD
501: AVDSVKSPDR DVLKPLLMPI CDVVRSSSGQ VSACGKLEAG AVRSGSKVMV MPSGDQGTVK SLERDSQGCS IARAGDNVAI ALQGIDANQV MAGGVLCHPD
601: YPVSVATRLE LMVLVLEGAT PILLGSQLEF HVHHAKEAAT VVKLVAMLDP KTGEATKKSP RCLTAKQSAM LEVSLQYPVC VETFSESRAL GRVFLRSSGR
701: TVAMGKVTRI IQDS

Best Arabidopsis Sequence Match ( AT5G10630.3 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTV ESRCKEPVVS
101: KLAKSLFGSV PSNKPKRAVL CLPEHTNLVM EQGPLPGISR GNIHDLYKAF SSKNSCVSIA PFKFDAPSPD DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS
201: VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM SLIGETENSS DIKIRGPKSQ SKHKPEEWML
301: LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER ERGITMTVAV AYFNSKRHHV VLLDSPGHKD
401: FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN
501: QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS KVMVMPSGDQ GTIRSLERDS QACTIARAGD
601: NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ
701: NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.