CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42938	Soybean	cytosol	94.07	94.79
GSMUA_Achr1P00050_001	Banana	cytosol	39.6	71.36
Bra006069.1-P	Field mustard	cytosol	49.18	61.9
CDX78392	Canola	cytosol	48.8	61.62
CDX70362	Canola	cytosol	50.57	61.6
VIT_03s0017g00530.t01	Wine grape	cytosol	59.02	61.58
Solyc03g119290.2.1	Tomato	cytosol	45.52	61.39
Solyc12g036410.1.1	Tomato	cytosol	45.27	61.05
CDX85751	Canola	cytosol	53.72	59.66
AT5G10630.4	Thale cress	cytosol	55.86	59.62
CDY40108	Canola	cytosol	53.97	59.53
CDY61091	Canola	cytosol	9.84	58.21
Bra028577.1-P	Field mustard	cytosol	52.08	56.58
Os01t0116600-01	Rice	cytosol	45.78	55.42
Os04t0596500-02	Rice	cytosol	45.78	55.34
EES12776	Sorghum	cytosol	46.66	54.57
GSMUA_Achr4P05390_001	Banana	cytosol	46.78	54.56
TraesCS2D01G443300.1	Wheat	cytosol	46.41	54.12
TraesCS2A01G444100.1	Wheat	cytosol	46.41	54.04
Os04t0677800-02	Rice	cytosol	46.28	53.81
TraesCS2B01G465300.1	Wheat	cytosol	46.15	53.74
EES13106	Sorghum	cytosol	46.41	52.42
TraesCS2A01G592500.1	Wheat	cytosol	44.26	51.24
Zm00001d001827_P005	Maize	cytosol	44.64	50.94
TraesCS2B01G591700.6	Wheat	cytosol	44.01	49.02
HORVU2Hr1G102800.6	Barley	cytosol, plastid	46.66	49.01
HORVU2Hr1G119310.19	Barley	cytosol	41.11	47.31
Zm00001d026213_P001	Maize	cytosol	46.78	44.7
TraesCS2D01G562000.1	Wheat	cytosol	44.39	43.19
KRG93959	Soybean	nucleus	20.05	35.57
KRH58241	Soybean	nucleus	19.92	35.35
KRH57863	Soybean	nucleus	19.8	35.12
KRH04781	Soybean	endoplasmic reticulum	19.67	34.9
KRH34904	Soybean	nucleus	19.67	34.82
KRH07098	Soybean	cytosol, mitochondrion, nucleus	19.55	34.68
KRH60492	Soybean	cytosol	20.81	32.67
KRH41785	Soybean	cytosol, nucleus	20.55	32.34
KRG95471	Soybean	nucleus	15.89	27.88
KRH67153	Soybean	nucleus	15.89	27.75
KRH03857	Soybean	plastid	15.38	27.29
KRH20931	Soybean	mitochondrion	15.13	26.67
KRH57147	Soybean	plastid	15.76	26.1
KRH54307	Soybean	mitochondrion, plastid	15.51	25.68
KRH63638	Soybean	endoplasmic reticulum, nucleus, plastid	15.51	25.62
KRH33293	Soybean	plastid	7.57	25.53
KRH11356	Soybean	mitochondrion	12.74	24.46

Protein Annotations

EntrezGene:100801724	MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A0A0R0JWG1
EMBL:ACUP02003299	InterPro:EFTu-like_2	EnsemblPlantsGene:GLYMA_05G163800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	GO:GO:0046872	InterPro:IPR000795
InterPro:IPR001876	EnsemblPlants:KRH59057	ProteinID:KRH59057	ProteinID:KRH59057.1	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS01358	PFscan:PS50199	PFscan:PS51722
PANTHER:PTHR23115	PANTHER:PTHR23115:SF219	SMART:SM00547	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540
SUPFAM:SSF90209	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0002339B33
InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:35490691..35498516

Molecular Weight (calculated)

86458.1 Da

IEP (calculated)

6.894

GRAVY (calculated)

-0.397

Length

793 amino acids

Sequence
(BLAST)

001: MPRKVNYGLD YDDDFYDDDY DDYAYDDADA EDYAEGPDTK QETIKPGLWQ CSICTYDNDE SMTFCDICGV VRRSLVNTGT SNSNKTVEDI SKSPGASKLA
101: RSLFQSLQQQ IPKEIVLFPK PDDGFLTDDS NFYKLENVRG EFHEIHKAFS TQSHPHLNID PFKFDVPSPD DVVYTGLRSS KTGLKDKATN TKSSQLSSSI
201: REKNELSVQS NAESSDNLSS LTRKSKQDSS AKSKLSKNVA IDLQTSGKTS NSLPESLSKD KGNNINKINS LKNGTIDIQS SKEKSGSLSA LSKVKESDNI
301: SFSSIKDGKP ESISSSFNNM ALNVRSGNSS GNSDNTNAKG TRSHVSYKPE KWMLPQQAED TLTQLNLAIV GHVDSGKSTL SGRLLHLLGR ISQKEMHKYE
401: KEAKLQGKGS FAYAWALDES SEERERGITM TVAVAYFDTK RYHVVVLDSP GHKDFVPNMI SGATQADAAI LVIDASLGSF EAGMDGSKGQ TREHAQLIRS
501: FGVDRVIVAV NKMDAVVYSK DRFDFIRQQL GVFLHSCGFK DSSLSWIPMS AMENQNLVAS PSDARLKNWY GGPYLLDAID SLQPPTREFS KPLLMPVCDV
601: IKSTTLGQVS ASGKLEAGAL RSGSKVLVMP SAVVGTVRSL ERDSNACTVA RAGDNVAVML QGVDGNHVMA GDVLCHPDFP VAVAKHLELK VLVLDGASPI
701: LVGTQLEFHI HHAKEPGRVS RILSVLDPKT GKVTKKSPRC LTAKQSAVIE VILNETVCVV EFSSCKALGR VSLRSMGRTI AVGVVTRIIE EQG

Best Arabidopsis Sequence Match ( AT5G10630.3 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTV ESRCKEPVVS
101: KLAKSLFGSV PSNKPKRAVL CLPEHTNLVM EQGPLPGISR GNIHDLYKAF SSKNSCVSIA PFKFDAPSPD DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS
201: VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM SLIGETENSS DIKIRGPKSQ SKHKPEEWML
301: LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER ERGITMTVAV AYFNSKRHHV VLLDSPGHKD
401: FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN
501: QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS KVMVMPSGDQ GTIRSLERDS QACTIARAGD
601: NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ
701: NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.