Factsheet for Solyc03g119290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g036410.1.1	Tomato	cytosol	71.6	71.6
GSMUA_Achr1P00050_001	Banana	cytosol	50.34	67.27
CDY61091	Canola	cytosol	12.76	55.97
CDX78392	Canola	cytosol	57.82	54.14
Bra006069.1-P	Field mustard	cytosol	57.65	53.81
CDX70362	Canola	cytosol	58.33	52.69
CDX85751	Canola	cytosol	61.05	50.28
CDY40108	Canola	cytosol	60.54	49.51
Bra028577.1-P	Field mustard	cytosol	60.88	49.04
GSMUA_Achr4P05390_001	Banana	cytosol	56.29	48.68
AT5G10630.4	Thale cress	cytosol	61.22	48.45
VIT_03s0017g00530.t01	Wine grape	cytosol	62.41	48.29
Os01t0116600-01	Rice	cytosol	52.72	47.33
Os04t0596500-02	Rice	cytosol	52.55	47.1
EES12776	Sorghum	cytosol	54.25	47.05
Os04t0677800-02	Rice	cytosol	53.91	46.48
EES13106	Sorghum	cytosol	54.93	46.01
KRH42938	Soybean	cytosol	61.56	46.0
TraesCS2D01G443300.1	Wheat	cytosol	52.89	45.74
Solyc03g118990.1.1	Tomato	cytosol	5.44	45.71
KRH59057	Soybean	cytosol	61.39	45.52
TraesCS2B01G465300.1	Wheat	cytosol	52.72	45.52
TraesCS2A01G444100.1	Wheat	cytosol	52.55	45.37
TraesCS2A01G592500.1	Wheat	cytosol	52.38	44.96
Zm00001d001827_P005	Maize	cytosol	51.87	43.88
TraesCS2B01G591700.6	Wheat	cytosol	52.04	42.98
HORVU2Hr1G119310.19	Barley	cytosol	49.32	42.09
HORVU2Hr1G102800.6	Barley	cytosol, plastid	52.89	41.19
Zm00001d026213_P001	Maize	cytosol	53.57	37.95
TraesCS2D01G562000.1	Wheat	cytosol	51.87	37.42
Solyc11g069700.1.1	Tomato	nucleus	26.02	34.23
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	25.85	33.93
Solyc06g005060.2.1	Tomato	cytosol	25.85	33.93
Solyc06g009960.1.1	Tomato	cytosol	23.47	33.66
Solyc06g069020.2.1	Tomato	cytosol, nucleus	28.06	30.9
Solyc09g073000.2.1	Tomato	plastid	19.73	25.78
Solyc06g008940.2.1	Tomato	unclear	19.56	25.5
Solyc06g071790.2.1	Tomato	nucleus, plastid	18.2	23.78
Solyc03g112150.1.1	Tomato	plastid	19.22	23.69

Protein Annotations

MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:IPR000795	UniProt:K4BM78	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143
PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF219	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc03g119290.2	EnsemblPlants:Solyc03g119290.2.1	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C
InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI00027665C0	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:67931160..67941354

Molecular Weight (calculated)

63597.4 Da

IEP (calculated)

8.481

GRAVY (calculated)

-0.204

Length

588 amino acids

Sequence
(BLAST)

001: MNVCDICGVF RNPLVKKCVS SKENAVPFKF DSPSPDDLVL SGIAPSKLRP KADTDRILQL DISSNIKELS TEVKKELAAE GHPSSSTSLA KVKNDDLKDS
101: GPASKTRGNN GLASNLNDIS VSSKPQSVDT GKSDSAASSS KNKPEKIVQP PQTEDNFNQL NLAIVGHVDS GKSTLSGRLL HLLGRISHKE MHKYEKEAKQ
201: QGKGSFAYAW ALDESAEERE RGITMTVGVA YFNTKCYRVV LLDSPGHRDF VPNMISGATQ ADAAVLVIDA SVGAFEAGID ATGGQTREHA QLIKSFGVDQ
301: IIIAVNKMDA VGYSQERFDA IKKQLGTFLR ACKFKDSSVT WIPVSAMENQ NLVTGPSESR FLSWFRGPCL LDAIDSLQPP QRDYSKPFLL PICDVVRAQS
401: QGQVSICGKL ERGALQTGNK VLVMPFRDVA TVRSLERDSQ VCNAAKAGDS VTINLQGIDA NHVMAGGVLC HPEFPVPVAN HLELKVLILE NGIPIVIGSQ
501: LEFLVHHAKE AARVVRILSL LDPKTGKETR KSPRCLLAKQ NAMIEVVLQG MVCIDEHANC KALGRVSLRS SGRTVALGLV TRVIGKQE

Best Arabidopsis Sequence Match ( AT5G10630.1 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEAAAE PKEEIAKTQG LWRCAICTYD NVETMFVCDI CGVLRHPVAG NQSINKNTAP FKFDAPSPDD
101: LVSNGLTSSK TGPKGSGDAS MRQKEKQDSV EQKPLKKGGD SSETSSRGRH DKLDDKGGAG GIKSGKSLPK AKADMSNETS SSSKYMETSE SLTGTMNKMS
201: LIGETENSSD IKIRGPKSQS KHKPEEWMLL DKESDALSQL NLAIVGHVDS GKSTLSGRLL HLLGRISQKQ MHKYEKEAKL QGKGSFAYAW ALDESAEERE
301: RGITMTVAVA YFNSKRHHVV LLDSPGHKDF VPNMIAGATQ ADAAILVIDA SVGAFEAGFD NLKGQTREHA RVLRGFGVEQ VIVAINKMDI VGYSKERFDL
401: IKQHVGSFLQ SCRFKDSSLT WIPLSAMENQ NLVAAPSDNR LSSWYQGPCL LDAVDSVKSP DRDVSKPLLM PICDAVRSTS QGQVSACGKL EAGAVRPGSK
501: VMVMPSGDQG TIRSLERDSQ ACTIARAGDN VALALQGIDA NQVMAGDVLC HPDFPVSVAT HLELMVLVLE GATPILLGSQ LEFHVHHAKE AATVVKLVAM
601: LDPKTGQPTK KSPRCLTAKQ SAMLEVSLQN PVCVETFSES RALGRVFLRS SGRTVAMGKV TRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.