Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 8
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
plastid: 22908117 nucleus: 25464976 plastid: 26371478 unclear: 26455813 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400009804 | Potato | mitochondrion | 98.44 | 98.44 |
Solyc06g008940.2.1 | Tomato | unclear | 92.0 | 91.8 |
AT4G02930.1 | Thale cress | mitochondrion | 88.22 | 87.44 |
Bra036234.1-P | Field mustard | mitochondrion | 87.78 | 87.0 |
CDY22085 | Canola | mitochondrion | 87.78 | 86.81 |
CDX90912 | Canola | mitochondrion | 87.33 | 86.75 |
Bra000853.1-P | Field mustard | mitochondrion | 87.11 | 86.53 |
CDY17978 | Canola | mitochondrion | 87.11 | 86.53 |
KRG95471 | Soybean | nucleus | 86.67 | 86.28 |
CDY21923 | Canola | mitochondrion | 87.11 | 85.96 |
KRH67153 | Soybean | nucleus | 86.44 | 85.68 |
GSMUA_Achr3P24830_001 | Banana | mitochondrion | 85.56 | 84.62 |
GSMUA_Achr8P06040_001 | Banana | mitochondrion | 85.33 | 84.4 |
HORVU5Hr1G122350.1 | Barley | cytosol | 57.56 | 84.36 |
Os03t0851100-01 | Rice | mitochondrion | 82.22 | 81.68 |
Zm00001d034856_P003 | Maize | mitochondrion | 81.78 | 81.42 |
EER90508 | Sorghum | mitochondrion | 81.78 | 81.24 |
TraesCS4A01G330400.1 | Wheat | mitochondrion | 79.33 | 78.98 |
TraesCS5D01G542300.1 | Wheat | mitochondrion | 79.11 | 78.94 |
TraesCS5B01G545200.1 | Wheat | mitochondrion | 78.89 | 78.54 |
Zm00001d012846_P005 | Maize | mitochondrion | 77.33 | 76.65 |
TraesCS1B01G431000.1 | Wheat | cytosol | 67.78 | 76.25 |
Zm00001d040673_P001 | Maize | mitochondrion | 18.67 | 73.68 |
TraesCS5B01G545300.2 | Wheat | cytosol | 64.44 | 72.86 |
Solyc06g071790.2.1 | Tomato | nucleus, plastid | 58.44 | 58.44 |
Solyc03g112150.1.1 | Tomato | plastid | 61.56 | 58.07 |
CDY62618 | Canola | endoplasmic reticulum, mitochondrion | 47.78 | 57.64 |
VIT_12s0034g01800.t01 | Wine grape | cytosol | 27.11 | 33.06 |
Solyc03g118990.1.1 | Tomato | cytosol | 4.67 | 30.0 |
Solyc06g009960.1.1 | Tomato | cytosol | 26.22 | 28.78 |
Solyc11g069700.1.1 | Tomato | nucleus | 28.0 | 28.19 |
Solyc06g009970.2.1 | Tomato | extracellular, nucleus, plastid | 28.0 | 28.12 |
Solyc06g005060.2.1 | Tomato | cytosol | 28.0 | 28.12 |
Solyc06g069020.2.1 | Tomato | cytosol, nucleus | 23.78 | 20.04 |
Solyc03g119290.2.1 | Tomato | cytosol | 25.78 | 19.73 |
Solyc12g036410.1.1 | Tomato | cytosol | 25.56 | 19.56 |
Protein Annotations
MapMan:17.7.4.1 | Gene3D:2.40.30.10 | Gene3D:3.40.50.300 | InterPro:EFTU_2 | InterPro:EFTu-like_2 | GO:GO:0000166 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003746 | GO:GO:0003824 | GO:GO:0003924 |
GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006412 |
GO:GO:0006414 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0016787 | GO:GO:0019538 | InterPro:G_TR_CS | InterPro:IPR000795 | UniProt:K4CUX6 | HAMAP:MF_00118_B |
InterPro:P-loop_NTPase | PFAM:PF00009 | PFAM:PF03143 | PFAM:PF03144 | PRINTS:PR00315 | ScanProsite:PS00301 |
PFscan:PS51722 | PANTHER:PTHR43721 | PANTHER:PTHR43721:SF12 | SUPFAM:SSF50447 | SUPFAM:SSF50465 | SUPFAM:SSF52540 |
InterPro:Small_GTP-bd_dom | EnsemblPlantsGene:Solyc09g073000.2 | EnsemblPlants:Solyc09g073000.2.1 | InterPro:TF_GTP-bd_dom | TIGRFAMs:TIGR00231 | TIGRFAMs:TIGR00485 |
InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EF1A/Init_IF2_C | InterPro:Transl_elong_EFTu/EF1A_C | InterPro:Transl_elong_EFTu/EF1A_bac/org | UniParc:UPI000276B188 | SEG:seg |
Description
Elongation factor Tu [Source:UniProtKB/TrEMBL;Acc:K4CUX6]
Coordinates
chr9:-:65659219..65666951
Molecular Weight (calculated)
49062.3 Da
IEP (calculated)
7.015
GRAVY (calculated)
-0.178
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVVFRNPN SKRVLSLSPQ IYSCCRGGSV STQFLLSETK NGNDTSSLSN PWWRSMATFT RTKPHVNVGT IGHVDHGKTT LTAAITKVLA EEGKAKAIAF
101: DEIDKAPEEK KRGITIATAH VEYETAKRHY AHVDCPGHAD YVKNMITGAA QMDGGILVVS APDGPMPQTK EHILLARQVG VPSLVCFLNK VDAVDDPELL
201: ELVEMELREL LSFYKFPGDE IPIIRGSALS ALQGTNEEIG KKAILKLMDA VDEYIPDPVR QLDKPFLMPV EDVFSIQGRG TVATGRIEQG TIKVGEDVEI
301: LGLMQGTLKS TVTGVEMFKK ILDNGQAGDN VGLLLRGLKR EDITRGMVIA KPGSVKTSKK FEAEIYVLTK DEGGRHTAFF SNYRPQFYMR TADITGKVEL
401: PENVKMVMPG DNVTATFELI SPVPLETGQR FALREGGRTV GAGVVSKVLS
101: DEIDKAPEEK KRGITIATAH VEYETAKRHY AHVDCPGHAD YVKNMITGAA QMDGGILVVS APDGPMPQTK EHILLARQVG VPSLVCFLNK VDAVDDPELL
201: ELVEMELREL LSFYKFPGDE IPIIRGSALS ALQGTNEEIG KKAILKLMDA VDEYIPDPVR QLDKPFLMPV EDVFSIQGRG TVATGRIEQG TIKVGEDVEI
301: LGLMQGTLKS TVTGVEMFKK ILDNGQAGDN VGLLLRGLKR EDITRGMVIA KPGSVKTSKK FEAEIYVLTK DEGGRHTAFF SNYRPQFYMR TADITGKVEL
401: PENVKMVMPG DNVTATFELI SPVPLETGQR FALREGGRTV GAGVVSKVLS
001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT
Arabidopsis Description
TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.