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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 8
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:mitochondrion
plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400009804 Potato mitochondrion 98.44 98.44
Solyc06g008940.2.1 Tomato unclear 92.0 91.8
AT4G02930.1 Thale cress mitochondrion 88.22 87.44
Bra036234.1-P Field mustard mitochondrion 87.78 87.0
CDY22085 Canola mitochondrion 87.78 86.81
CDX90912 Canola mitochondrion 87.33 86.75
Bra000853.1-P Field mustard mitochondrion 87.11 86.53
CDY17978 Canola mitochondrion 87.11 86.53
KRG95471 Soybean nucleus 86.67 86.28
CDY21923 Canola mitochondrion 87.11 85.96
KRH67153 Soybean nucleus 86.44 85.68
GSMUA_Achr3P24830_001 Banana mitochondrion 85.56 84.62
GSMUA_Achr8P06040_001 Banana mitochondrion 85.33 84.4
HORVU5Hr1G122350.1 Barley cytosol 57.56 84.36
Os03t0851100-01 Rice mitochondrion 82.22 81.68
Zm00001d034856_P003 Maize mitochondrion 81.78 81.42
EER90508 Sorghum mitochondrion 81.78 81.24
TraesCS4A01G330400.1 Wheat mitochondrion 79.33 78.98
TraesCS5D01G542300.1 Wheat mitochondrion 79.11 78.94
TraesCS5B01G545200.1 Wheat mitochondrion 78.89 78.54
Zm00001d012846_P005 Maize mitochondrion 77.33 76.65
TraesCS1B01G431000.1 Wheat cytosol 67.78 76.25
Zm00001d040673_P001 Maize mitochondrion 18.67 73.68
TraesCS5B01G545300.2 Wheat cytosol 64.44 72.86
Solyc06g071790.2.1 Tomato nucleus, plastid 58.44 58.44
Solyc03g112150.1.1 Tomato plastid 61.56 58.07
CDY62618 Canola endoplasmic reticulum, mitochondrion 47.78 57.64
VIT_12s0034g01800.t01 Wine grape cytosol 27.11 33.06
Solyc03g118990.1.1 Tomato cytosol 4.67 30.0
Solyc06g009960.1.1 Tomato cytosol 26.22 28.78
Solyc11g069700.1.1 Tomato nucleus 28.0 28.19
Solyc06g009970.2.1 Tomato extracellular, nucleus, plastid 28.0 28.12
Solyc06g005060.2.1 Tomato cytosol 28.0 28.12
Solyc06g069020.2.1 Tomato cytosol, nucleus 23.78 20.04
Solyc03g119290.2.1 Tomato cytosol 25.78 19.73
Solyc12g036410.1.1 Tomato cytosol 25.56 19.56
Protein Annotations
MapMan:17.7.4.1Gene3D:2.40.30.10Gene3D:3.40.50.300InterPro:EFTU_2InterPro:EFTu-like_2GO:GO:0000166
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003746GO:GO:0003824GO:GO:0003924
GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006412
GO:GO:0006414GO:GO:0008135GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016787GO:GO:0019538InterPro:G_TR_CSInterPro:IPR000795UniProt:K4CUX6HAMAP:MF_00118_B
InterPro:P-loop_NTPasePFAM:PF00009PFAM:PF03143PFAM:PF03144PRINTS:PR00315ScanProsite:PS00301
PFscan:PS51722PANTHER:PTHR43721PANTHER:PTHR43721:SF12SUPFAM:SSF50447SUPFAM:SSF50465SUPFAM:SSF52540
InterPro:Small_GTP-bd_domEnsemblPlantsGene:Solyc09g073000.2EnsemblPlants:Solyc09g073000.2.1InterPro:TF_GTP-bd_domTIGRFAMs:TIGR00231TIGRFAMs:TIGR00485
InterPro:Transl_B-barrel_sfInterPro:Transl_elong_EF1A/Init_IF2_CInterPro:Transl_elong_EFTu/EF1A_CInterPro:Transl_elong_EFTu/EF1A_bac/orgUniParc:UPI000276B188SEG:seg
Description
Elongation factor Tu [Source:UniProtKB/TrEMBL;Acc:K4CUX6]
Coordinates
chr9:-:65659219..65666951
Molecular Weight (calculated)
49062.3 Da
IEP (calculated)
7.015
GRAVY (calculated)
-0.178
Length
450 amino acids
Sequence
(BLAST)
001: MASVVFRNPN SKRVLSLSPQ IYSCCRGGSV STQFLLSETK NGNDTSSLSN PWWRSMATFT RTKPHVNVGT IGHVDHGKTT LTAAITKVLA EEGKAKAIAF
101: DEIDKAPEEK KRGITIATAH VEYETAKRHY AHVDCPGHAD YVKNMITGAA QMDGGILVVS APDGPMPQTK EHILLARQVG VPSLVCFLNK VDAVDDPELL
201: ELVEMELREL LSFYKFPGDE IPIIRGSALS ALQGTNEEIG KKAILKLMDA VDEYIPDPVR QLDKPFLMPV EDVFSIQGRG TVATGRIEQG TIKVGEDVEI
301: LGLMQGTLKS TVTGVEMFKK ILDNGQAGDN VGLLLRGLKR EDITRGMVIA KPGSVKTSKK FEAEIYVLTK DEGGRHTAFF SNYRPQFYMR TADITGKVEL
401: PENVKMVMPG DNVTATFELI SPVPLETGQR FALREGGRTV GAGVVSKVLS
Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)
001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT
Arabidopsis Description
TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.