CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034856_P003	Maize	mitochondrion	96.25	96.46
Os03t0851100-01	Rice	mitochondrion	92.72	92.72
Zm00001d012846_P005	Maize	mitochondrion	88.52	88.33
TraesCS4A01G330400.1	Wheat	mitochondrion	87.2	87.39
HORVU5Hr1G122350.1	Barley	cytosol	59.16	87.3
TraesCS5B01G545200.1	Wheat	mitochondrion	86.98	87.17
TraesCS5D01G542300.1	Wheat	mitochondrion	86.09	86.47
Zm00001d040673_P001	Maize	mitochondrion	21.41	85.09
GSMUA_Achr8P06040_001	Banana	mitochondrion	85.43	85.05
VIT_07s0104g00600.t01	Wine grape	mitochondrion	81.9	82.63
KRG95471	Soybean	nucleus	81.9	82.08
Solyc09g073000.2.1	Tomato	plastid	81.24	81.78
PGSC0003DMT400009804	Potato	mitochondrion	81.02	81.56
KRH67153	Soybean	nucleus	81.46	81.28
Solyc06g008940.2.1	Tomato	unclear	80.57	80.93
PGSC0003DMT400037909	Potato	plastid	80.35	80.71
KRH20931	Soybean	mitochondrion	80.13	80.67
AT4G02930.1	Thale cress	mitochondrion	79.69	79.52
CDY22085	Canola	mitochondrion	79.69	79.34
Bra036234.1-P	Field mustard	mitochondrion	79.47	79.3
CDX90912	Canola	mitochondrion	79.03	79.03
Bra000853.1-P	Field mustard	mitochondrion	78.81	78.81
CDY17978	Canola	mitochondrion	78.81	78.81
CDY21923	Canola	mitochondrion	79.25	78.73
TraesCS1B01G431000.1	Wheat	cytosol	68.43	77.5
KRH11356	Soybean	mitochondrion	69.09	75.79
TraesCS5B01G545300.2	Wheat	cytosol	65.78	74.87
VIT_17s0000g09140.t01	Wine grape	cytosol	23.4	66.25
VIT_05s0029g00030.t01	Wine grape	cytosol	18.32	63.36
EES05366	Sorghum	plastid	57.62	56.01
CDY62618	Canola	endoplasmic reticulum, mitochondrion	44.81	54.42
VIT_12s0034g01800.t01	Wine grape	cytosol	25.39	31.17
OQU75582	Sorghum	cytosol	7.95	28.8
EER97380	Sorghum	cytosol	28.04	28.41
KXG20293	Sorghum	cytosol	28.04	28.41
KXG20294	Sorghum	cytosol	28.04	28.41
KXG20296	Sorghum	cytosol	28.04	28.41
KXG20299	Sorghum	cytosol	28.04	28.41
OQU75597	Sorghum	cytosol	10.82	28.0
EES10540	Sorghum	cytosol	24.5	20.63
EES12776	Sorghum	cytosol	28.26	18.88
EES13106	Sorghum	cytosol	26.49	17.09

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EntrezGene:8061408	UniProt:C5WSV4	EnsemblPlants:EER90508
ProteinID:EER90508	ProteinID:EER90508.1	InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005524	GO:GO:0005525	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0030312	GO:GO:0046686	GO:GO:0050897	InterPro:G_TR_CS	InterPro:IPR000795	HAMAP:MF_00118_B
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF12	EnsemblPlantsGene:SORBI_3001G011000	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	unigene:Sbi.1698	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI0001A824DB	RefSeq:XP_002463510.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:955066..959328

Molecular Weight (calculated)

48583.7 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.101

Length

453 amino acids

Sequence
(BLAST)

001: MASAAVLRNA GSRRLFSYPA LRATAISGPA ALPDAPAAAA AAPAQPPPMA GTLWARSMAT FTRTKPHVNV GTIGHVDHGK TTLTAAITKV LAEAGKAKAV
101: AFDEIDKAPE EKARGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSAPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDAVDDPE
201: LLELVEMELR ELLTFYKFPG DEIPIIRGSA LSALQGNNDE IGKNAILKLM DAVDEYIPDP VRQLDKPFLM PIEDVFSIQG RGTVVTGRVE QGTIKTGEDV
301: EILGLTQSGP LKTTVTGVEM FKKILDHGEA GDNVGLLLRG LKRGDVERGQ VVCKPGSLKT YKKFEAEIYV LTKDEGGRHT HFMTNYSPQF YFRTADVTGK
401: VELLGETKMV LPGDNVTANF ELISPVPLEP GQRFALREGG RTVGAGVVSK VIS

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.