CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

nucleus 1
mitochondrion 4
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G122350.1	Barley	cytosol	51.47	62.54
Zm00001d040673_P001	Maize	mitochondrion	17.43	57.02
CDX90912	Canola	mitochondrion	63.0	51.88
CDY22085	Canola	mitochondrion	63.0	51.65
CDY21923	Canola	mitochondrion	63.0	51.54
CDY17978	Canola	mitochondrion	62.47	51.43
AT4G02930.1	Thale cress	mitochondrion	61.66	50.66
KRG95471	Soybean	nucleus	57.91	47.79
Solyc09g073000.2.1	Tomato	plastid	57.64	47.78
KRH67153	Soybean	nucleus	57.91	47.58
PGSC0003DMT400009804	Potato	mitochondrion	57.37	47.56
Solyc06g008940.2.1	Tomato	unclear	56.3	46.56
PGSC0003DMT400037909	Potato	plastid	56.3	46.56
GSMUA_Achr3P24830_001	Banana	mitochondrion	54.96	45.05
Os03t0851100-01	Rice	mitochondrion	54.69	45.03
Zm00001d034856_P003	Maize	mitochondrion	54.42	44.91
GSMUA_Achr8P06040_001	Banana	mitochondrion	54.69	44.84
EER90508	Sorghum	mitochondrion	54.42	44.81
TraesCS1B01G431000.1	Wheat	cytosol	47.72	44.5
TraesCS5D01G542300.1	Wheat	mitochondrion	52.55	43.46
TraesCS5B01G545200.1	Wheat	mitochondrion	52.55	43.36
TraesCS4A01G330400.1	Wheat	mitochondrion	52.55	43.36
Zm00001d012846_P005	Maize	mitochondrion	49.87	40.97
TraesCS5B01G545300.2	Wheat	cytosol	43.7	40.95
CDX98668	Canola	plastid	29.22	39.35
CDX94002	Canola	plastid	29.22	38.52
CDX82758	Canola	plastid	29.22	38.38
CDX78988	Canola	plastid	29.22	36.09
CDY54570	Canola	plastid	29.22	34.94
CDY31442	Canola	plastid	29.22	34.94
CDY49485	Canola	plastid	29.22	31.87
CDY49022	Canola	plastid	29.22	31.78
VIT_12s0034g01800.t01	Wine grape	cytosol	22.52	22.76
CDX70032	Canola	cytosol	17.69	19.19
CDX88757	Canola	cytosol	16.89	15.71
CDY22711	Canola	cytosol	17.69	15.46
CDY22710	Canola	cytosol	17.69	15.46
CDY34479	Canola	cytosol	17.69	15.42
CDY61938	Canola	cytosol	17.69	15.42
CDY10804	Canola	cytosol	17.69	15.42
CDY09211	Canola	cytosol	17.69	15.42
CDY06289	Canola	cytosol	10.46	15.23
CDY67375	Canola	cytosol	11.26	15.11
CDY67376	Canola	cytosol	4.56	14.78
CDY69678	Canola	cytosol	4.56	14.78
CDY06288	Canola	cytosol	4.56	14.78
CDY06290	Canola	cytosol	4.56	14.78
CDX93604	Canola	cytosol	17.69	14.35
CDX95108	Canola	cytosol, extracellular	18.5	14.17
CDY58828	Canola	cytosol	18.5	12.15
CDY06287	Canola	cytosol	6.97	11.45
CDX96737	Canola	cytosol	15.82	11.39
CDX83874	Canola	endoplasmic reticulum	15.55	11.2
CDX78392	Canola	cytosol	16.62	9.87
CDY19192	Canola	cytosol	14.21	9.76
CDX70362	Canola	cytosol	16.89	9.68
CDY21721	Canola	cytosol	14.75	9.55
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	14.75	9.42
CDX85751	Canola	cytosol	17.43	9.1
CDY26187	Canola	golgi, vacuole	14.21	9.06
CDY40108	Canola	cytosol	16.62	8.62
CDY61091	Canola	cytosol	2.68	7.46
CDY09214	Canola	cytosol	1.88	4.38

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078J7G0	UniProt:A0A078J7G0	EnsemblPlants:CDY62618
ProteinID:CDY62618	ProteinID:CDY62618.1	InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	EnsemblPlantsGene:GSBRNA2T00036459001	InterPro:P-loop_NTPase	PFAM:PF03143	PFAM:PF03144
PANTHER:PTHR43721	PANTHER:PTHR43721:SF12	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0004EDFEFA	SEG:seg	:	:

Description

BnaC08g46600DBnaC08g46600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7G0]

Coordinates

chrLK034170:-:23339..25370

Molecular Weight (calculated)

41375.0 Da

IEP (calculated)

4.673

GRAVY (calculated)

-0.246

Length

373 amino acids

Sequence
(BLAST)

001: MDPCLRRRNL FYLHVRVGVQ SFVCLLNKVD VVDVPELLEL VEMELRELLS FYKFPGDDIP IIRGSSPSAL QGTNDEIGRQ AILKLMDAVD EYIPDHVRVL
101: DKPFLMPIED VFSIQGRGTV AKGRIEQGVI KVGEEVEILG LKDGLPMKST VTRVEMFKKI LDNGQAGYNV GLLLRGLKRE DIQPGMPGSC KTYKKFEAEI
201: YVLTKDEDIT GRVELPEDVK MVMPGDNVTA VFELIMPVPL EIGQRFALRE GGRTVGAGVV SKGSNGGEEY LPNCLEELTG KEFLFQIRVT PFNFTPNHRS
301: FTVSTMTEDN TLENHGNGKE QGENILPSGE DEVGMAASSL GPSVLRDKIS EECASADPPE ISNTLNKLKR CRE

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.