CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031605.1-P	Field mustard	cytosol	100.0	100.0
CDY06288	Canola	cytosol	26.93	100.0
CDY06290	Canola	cytosol	26.93	100.0
CDY22710	Canola	cytosol	100.0	100.0
CDY67376	Canola	cytosol	26.93	100.0
CDY69678	Canola	cytosol	26.93	100.0
CDY09211	Canola	cytosol	97.89	97.66
CDY10804	Canola	cytosol	97.89	97.66
CDY34479	Canola	cytosol	97.89	97.66
CDY61938	Canola	cytosol	97.89	97.66
CDX88757	Canola	cytosol	91.57	97.51
CDY67375	Canola	cytosol	61.83	94.96
GSMUA_Achr10P...	Banana	cytosol	62.53	94.68
GSMUA_Achr10P...	Banana	cytosol	61.83	94.62
CDY06287	Canola	cytosol	49.65	93.39
CDY06289	Canola	cytosol	55.74	92.97
CDX70032	Canola	cytosol	74.24	92.15
KRG93959	Soybean	nucleus	95.78	91.5
KRH58241	Soybean	nucleus	95.78	91.5
HORVU4Hr1G056830.1	Barley	cytosol	62.76	91.47
KRH07098	Soybean	cytosol, mitochondrion, nucleus	95.32	91.05
Os03t0177400-01	Rice	cytosol	95.32	91.05
Os03t0177500-01	Rice	cytosol	95.32	91.05
Os03t0177900-01	Rice	plasma membrane	95.32	91.05
Os03t0178000-02	Rice	cytosol	95.32	91.05
CDX93604	Canola	cytosol	97.89	90.87
GSMUA_Achr6P04090_001	Banana	cytosol	41.92	90.86
Solyc06g005060.2.1	Tomato	cytosol	95.32	90.85
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	95.32	90.85
VIT_06s0004g03240.t01	Wine grape	cytosol	95.08	90.83
KRH34904	Soybean	nucleus	95.08	90.62
KXG20293	Sorghum	cytosol	94.85	90.6
KXG20294	Sorghum	cytosol	94.85	90.6
KXG20296	Sorghum	cytosol	94.85	90.6
KXG20299	Sorghum	cytosol	94.85	90.6
PGSC0003DMT400050663	Potato	cytosol	94.85	90.6
Zm00001d036904_P001	Maize	cytosol	94.85	90.6
Solyc11g069700.1.1	Tomato	nucleus	94.61	90.38
PGSC0003DMT400053547	Potato	cytosol	94.61	90.18
PGSC0003DMT400053553	Potato	cytosol	94.61	90.18
PGSC0003DMT400059830	Potato	cytosol	94.61	90.18
PGSC0003DMT400059832	Potato	cytosol	94.61	90.18
Zm00001d046449_P003	Maize	cytosol	94.38	90.16
KRH04781	Soybean	endoplasmic reticulum	94.15	89.93
KRH57863	Soybean	nucleus	94.15	89.93
PGSC0003DMT400020968	Potato	cytosol	94.15	89.93
VIT_08s0040g02330.t01	Wine grape	cytosol	93.91	89.71
GSMUA_Achr3P17840_001	Banana	cytosol	31.85	89.47
Zm00001d037905_P010	Maize	cytosol	94.38	89.36
HORVU4Hr1G056740.1	Barley	cytosol	93.44	89.26
TraesCS4A01G107600.1	Wheat	cytosol	93.44	89.26
TraesCS4A01G107700.1	Wheat	cytosol	93.44	89.26
TraesCS4B01G196900.1	Wheat	golgi	93.44	89.26
TraesCS5A01G415400.1	Wheat	cytosol	93.44	89.26
TraesCS5A01G415600.1	Wheat	cytosol	93.44	89.26
TraesCS5B01G418100.1	Wheat	cytosol	93.44	89.26
TraesCS5B01G418200.1	Wheat	cytosol	93.44	89.26
Zm00001d009868_P015	Maize	cytosol	94.15	89.14
Zm00001d009870_P008	Maize	cytosol	94.15	89.14
Zm00001d037873_P010	Maize	cytosol	94.15	89.14
Solyc06g009960.1.1	Tomato	cytosol	85.48	89.02
Zm00001d037875_P014	Maize	cytosol	93.91	88.91
Zm00001d037877_P014	Maize	cytosol	93.91	88.91
VIT_13s0019g03920.t01	Wine grape	cytosol	93.91	88.13
GSMUA_AchrUn_...	Banana	cytosol	42.86	87.56
CDX95108	Canola	cytosol, extracellular	99.53	87.27
HORVU5Hr1G100200.3	Barley	mitochondrion	93.44	85.99
HORVU5Hr1G100700.3	Barley	plasma membrane	93.44	85.81
GSMUA_Achr2P19000_001	Banana	cytosol	15.22	84.42
CDY09214	Canola	cytosol	31.62	84.38
Zm00001d037882_P001	Maize	cytosol	36.3	83.78
HORVU6Hr1G085320.3	Barley	cytosol	86.18	83.45
HORVU4Hr1G056820.1	Barley	plasma membrane	92.97	83.4
TraesCS4B01G196800.2	Wheat	golgi	93.44	82.61
GSMUA_Achr5P24440_001	Banana	cytosol	24.36	81.89
HORVU6Hr1G085370.1	Barley	cytosol	85.48	80.75
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	77.05	80.64
VIT_06s0004g03220.t01	Wine grape	cytosol	95.08	78.38
HORVU5Hr1G051280.1	Barley	cytosol	18.74	76.92
Zm00001d009887_P001	Maize	cytosol	25.76	75.34
OQU75582	Sorghum	cytosol	22.01	75.2
CDY58828	Canola	cytosol	99.53	74.82
OQU75597	Sorghum	cytosol	29.74	72.57
GSMUA_Achr10P...	Banana	cytosol, plastid	35.36	70.23
VIT_19s0014g04110.t01	Wine grape	cytosol	18.27	64.46
GSMUA_Achr6P02020_001	Banana	mitochondrion	51.05	63.01
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	12.41	50.0
CDX96737	Canola	cytosol	34.89	28.76
CDX83874	Canola	endoplasmic reticulum	34.19	28.19
CDY19192	Canola	cytosol	34.19	26.89
CDY61091	Canola	cytosol	8.43	26.87
CDY21721	Canola	cytosol	35.36	26.22
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	35.36	25.86
CDY22085	Canola	mitochondrion	27.17	25.49
CDX90912	Canola	mitochondrion	26.93	25.39
CDY21923	Canola	mitochondrion	26.93	25.22
CDY17978	Canola	mitochondrion	26.7	25.17
CDX82758	Canola	plastid	16.63	25.0
CDY26187	Canola	golgi, vacuole	34.19	24.96
CDX98668	Canola	plastid	15.22	23.47
CDY49022	Canola	plastid	18.74	23.32
CDX78392	Canola	cytosol	34.19	23.25
CDY49485	Canola	plastid	18.5	23.1
CDX94002	Canola	plastid	15.22	22.97
CDX70362	Canola	cytosol	34.89	22.89
CDX78988	Canola	plastid	15.22	21.52
CDY54570	Canola	plastid	15.46	21.15
CDY40108	Canola	cytosol	35.36	21.0
CDY31442	Canola	plastid	15.22	20.83
CDX85751	Canola	cytosol	34.66	20.73
CDY62618	Canola	endoplasmic reticulum, mitochondrion	15.46	17.69

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078G8C9	UniProt:A0A078G8C9	ProteinID:CDY22710.1
EnsemblPlants:CDY22711	ProteinID:CDY22711	ProteinID:CDY22711.1	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00019384001	InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0002543375	SEG:seg	:

Description

BnaC08g43450DBnaC08g43440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8C9]

Coordinates

chrLK032134:-:600254..602827

Molecular Weight (calculated)

46800.8 Da

IEP (calculated)

9.682

GRAVY (calculated)

-0.321

Length

427 amino acids

Sequence
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAELIDA PGHRDFIKNM ITGTSQADCA VLIIDSTTGG
101: FEAGISKDGQ TREHALLAFT LGVKQMICCC NKMDATTPKY SKARYDEIIK EVSSYLKKVG YNPDKIPFVP ISGFEGDNMI ERSTNLDWYK GPTLLEALDQ
201: INEPKRPSDK PLRLPLQDVY KIGGIGTVPV GRVETGMLKP GMVVTFAPSG LTTEVKSVEM HHESLVEALP GDNVGFNVKN VAVKDLKRGY VASNSKDDPA
301: KGAANFTSQV IIMNHPGQIG NGYAPVLDCH TSHIAVKFSE ILTKIDRRSG KEIEKEPKFL KNGDAGMVKM TPTKPMVVET FSEYPPLGRF AVRDMRQTVA
401: VGVIKSVDKK DPTGAKVTKA AVKKGAK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.