Factsheet for HORVU5Hr1G100200.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G045920.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	HORVU5Hr1G045920.2	AT3G54220.1	19228333
AT1G07930.1	HORVU5Hr1G045920.2	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G056740.1	Barley	cytosol	96.34	100.0
TraesCS5B01G418100.1	Wheat	cytosol	96.34	100.0
TraesCS5B01G418200.1	Wheat	cytosol	96.34	100.0
TraesCS5D01G423300.1	Wheat	cytosol	96.34	100.0
TraesCS5D01G423400.1	Wheat	cytosol	96.34	100.0
HORVU4Hr1G056830.1	Barley	cytosol	62.93	99.66
TraesCS5A01G415400.1	Wheat	cytosol	95.69	99.33
TraesCS5A01G415600.1	Wheat	cytosol	95.69	99.33
GSMUA_Achr5P24440_001	Banana	cytosol	27.16	99.21
CDY09214	Canola	cytosol	34.05	98.75
HORVU5Hr1G051280.1	Barley	cytosol	21.98	98.08
HORVU5Hr1G100700.3	Barley	plasma membrane	97.2	96.99
KRH07098	Soybean	cytosol, mitochondrion, nucleus	93.32	96.87
KRG93959	Soybean	nucleus	93.1	96.64
Os03t0177400-01	Rice	cytosol	93.1	96.64
Os03t0177500-01	Rice	cytosol	93.1	96.64
Os03t0177900-01	Rice	plasma membrane	93.1	96.64
Os03t0178000-02	Rice	cytosol	93.1	96.64
HORVU0Hr1G017020.1	Barley	cytosol	92.89	96.42
HORVU2Hr1G013680.1	Barley	cytosol, plasma membrane	92.89	96.42
Zm00001d046449_P003	Maize	cytosol	92.89	96.42
Zm00001d037882_P001	Maize	cytosol	38.36	96.22
KRH58241	Soybean	nucleus	92.67	96.2
GSMUA_Achr2P19000_001	Banana	cytosol	15.95	96.1
CDY06287	Canola	cytosol	46.98	96.04
KXG20293	Sorghum	cytosol	92.46	95.97
KXG20294	Sorghum	cytosol	92.46	95.97
KXG20296	Sorghum	cytosol	92.46	95.97
KXG20299	Sorghum	cytosol	92.46	95.97
Zm00001d037875_P014	Maize	cytosol	93.1	95.79
Zm00001d037877_P014	Maize	cytosol	93.1	95.79
Zm00001d036904_P001	Maize	cytosol	92.24	95.75
Zm00001d009870_P008	Maize	cytosol	92.89	95.57
Zm00001d037873_P010	Maize	cytosol	92.89	95.57
Zm00001d037905_P010	Maize	cytosol	92.89	95.57
KRH34904	Soybean	nucleus	92.24	95.54
PGSC0003DMT400020968	Potato	cytosol	92.03	95.53
VIT_06s0004g03240.t01	Wine grape	cytosol	92.03	95.53
Bra031601.1-P	Field mustard	cytosol	40.73	95.45
GSMUA_Achr10P...	Banana	cytosol	57.97	95.39
CDY67375	Canola	cytosol	57.11	95.32
KRH04781	Soybean	endoplasmic reticulum	91.81	95.3
KRH57863	Soybean	nucleus	91.81	95.3
PGSC0003DMT400050663	Potato	cytosol	91.81	95.3
Solyc11g069700.1.1	Tomato	nucleus	91.81	95.3
Zm00001d009868_P015	Maize	cytosol	92.46	95.12
PGSC0003DMT400053547	Potato	cytosol	91.81	95.09
PGSC0003DMT400053553	Potato	cytosol	91.81	95.09
PGSC0003DMT400059830	Potato	cytosol	91.81	95.09
PGSC0003DMT400059832	Potato	cytosol	91.81	95.09
Solyc06g005060.2.1	Tomato	cytosol	91.81	95.09
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	91.81	95.09
GSMUA_Achr10P...	Banana	cytosol	57.11	94.98
VIT_08s0040g02330.t01	Wine grape	cytosol	91.38	94.85
AT1G07920.1	Thale cress	cytosol	91.59	94.65
AT1G07930.1	Thale cress	cytosol	91.59	94.65
AT1G07940.3	Thale cress	cytosol	91.59	94.65
AT5G60390.2	Thale cress	cytosol	91.59	94.65
HORVU4Hr1G056820.1	Barley	plasma membrane	96.98	94.54
CDY06289	Canola	cytosol	52.16	94.53
Solyc06g009960.1.1	Tomato	cytosol	83.41	94.39
Bra002483.1-P	Field mustard	cytosol	90.95	93.99
Bra018669.1-P	Field mustard	cytosol	90.95	93.99
Bra031602.1-P	Field mustard	cytosol	90.95	93.99
CDX88757	Canola	cytosol	81.03	93.77
Bra018242.1-P	Field mustard	cytosol	90.73	93.76
Bra020253.1-P	Field mustard	cytosol	90.73	93.76
CDY09211	Canola	cytosol	86.42	93.69
CDY10804	Canola	cytosol	86.42	93.69
CDY34479	Canola	cytosol	86.42	93.69
CDY61938	Canola	cytosol	86.42	93.69
HORVU6Hr1G085320.3	Barley	cytosol	89.01	93.65
OQU75582	Sorghum	cytosol	25.22	93.6
Bra031605.1-P	Field mustard	cytosol	85.99	93.44
CDY22710	Canola	cytosol	85.99	93.44
CDY22711	Canola	cytosol	85.99	93.44
VIT_13s0019g03920.t01	Wine grape	cytosol	91.59	93.41
Bra006661.1-P	Field mustard	cytosol	90.09	93.1
Bra020251.1-P	Field mustard	cytosol	82.54	92.96
GSMUA_Achr6P04090_001	Banana	cytosol	39.22	92.39
HORVU6Hr1G085370.1	Barley	cytosol	88.36	90.71
Zm00001d009887_P001	Maize	cytosol	28.23	89.73
GSMUA_Achr3P17840_001	Banana	cytosol	29.09	88.82
GSMUA_AchrUn_...	Banana	cytosol	39.66	88.04
CDX93604	Canola	cytosol	86.42	87.17
CDX95108	Canola	cytosol, extracellular	90.95	86.65
CDX70032	Canola	cytosol	64.22	86.63
OQU75597	Sorghum	cytosol	32.54	86.29
CDY06288	Canola	cytosol	21.34	86.09
CDY06290	Canola	cytosol	21.34	86.09
CDY67376	Canola	cytosol	21.34	86.09
CDY69678	Canola	cytosol	21.34	86.09
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	75.65	86.03
VIT_06s0004g03220.t01	Wine grape	cytosol	92.03	82.43
GSMUA_Achr10P...	Banana	cytosol, plastid	37.72	81.4
VIT_19s0014g04110.t01	Wine grape	cytosol	21.12	80.99
Bra030707.1-P	Field mustard	cytosol	90.95	71.53
CDY58828	Canola	cytosol	85.99	70.25
GSMUA_Achr6P02020_001	Banana	mitochondrion	51.51	69.08
HORVU2Hr1G012860.1	Barley	cytosol	34.05	32.44
HORVU3Hr1G020770.1	Barley	cytosol	10.34	30.38
HORVU5Hr1G122350.1	Barley	cytosol	19.4	29.32
HORVU0Hr1G026370.1	Barley	mitochondrion	11.21	23.53
HORVU2Hr1G079480.2	Barley	cytosol, plastid	12.72	22.18
HORVU2Hr1G040960.1	Barley	mitochondrion	10.99	21.34
HORVU6Hr1G053680.5	Barley	plastid	23.28	21.01
HORVU2Hr1G102800.6	Barley	cytosol, plastid	33.84	20.79
HORVU2Hr1G119310.19	Barley	cytosol	30.6	20.61
HORVU2Hr1G040970.1	Barley	mitochondrion	11.21	11.48

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A0A287SHU0	ncoils:Coil	InterPro:EFTu-like_2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	EnsemblPlantsGene:HORVU5Hr1G100200
EnsemblPlants:HORVU5Hr1G100200.3	InterPro:IPR000795	HAMAP:MF_00118_A	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143
PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000B468489	:	:

Description

Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:A0A287SHU0]

Coordinates

chrchr5H:+:611298406..611301181

Molecular Weight (calculated)

50937.9 Da

IEP (calculated)

9.856

GRAVY (calculated)

-0.275

Length

464 amino acids

Sequence
(BLAST)

001: RRRPLSVPSP SFLGGSAMGK EKTHINIVVI GHVDSGKSTT TGHLIYKLGG IDKRVIERFE KEAAEMNKRS FKYAWVLDKL KAERERGITI DIALWKFETT
101: KYYCTVIDAP GHRDFIKNMI TGTSQADCAV LIIDSTTGGF EAGISKDGQT REHALLAFTL GVKQMICCCN KMDATTPKYS KARYEEIVKE VSSYLKKVGY
201: NPDKVPFVPI SGFEGDNMIE RSTNLDWYKG PTLLEALDQI NEPKRPSDKP LRLPLQDVYK IGGIGTVPVG RVETGVIKPG MVVTFGPTGL TTEVKSVEMH
301: HESLLEALPG DNVGFNVKNV AVKDLKRGFV ASNSKDDPAK EAANFTSQVI IMNHPGQIGN GYAPVLDCHT SHIAVKFAEL VTKIDRRSGK ELEALPKFLK
401: NGDAGIVKMI PTKPMVVETF ATYPPLGRFA VRDMRQTVAV GVIKGVEKKD PTGAKVTKAA IKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.