Factsheet for GSMUA_Achr7P15510_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P21440_001
GSMUA_Achr8P09400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G07920.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G07920.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P24440_001	Banana	cytosol	30.88	99.21
GSMUA_AchrUn_...	Banana	cytosol	46.08	89.95
GSMUA_Achr3P17840_001	Banana	cytosol	33.09	88.82
GSMUA_Achr10P...	Banana	cytosol	58.82	86.02
CDY67375	Canola	cytosol	58.58	85.97
HORVU5Hr1G051280.1	Barley	cytosol	21.81	85.58
CDY06289	Canola	cytosol	53.68	85.55
CDY06287	Canola	cytosol	47.55	85.46
Bra031601.1-P	Field mustard	cytosol	40.2	82.83
Zm00001d037882_P001	Maize	cytosol	37.5	82.7
CDY09214	Canola	cytosol	32.35	82.5
CDX88757	Canola	cytosol	80.39	81.8
Solyc06g009960.1.1	Tomato	cytosol	81.62	81.22
GSMUA_Achr6P04090_001	Banana	cytosol	38.97	80.71
Os03t0177500-01	Rice	cytosol	87.75	80.09
Os03t0177400-01	Rice	cytosol	87.75	80.09
Solyc11g069700.1.1	Tomato	nucleus	87.75	80.09
Os03t0177900-01	Rice	plasma membrane	87.75	80.09
Os03t0178000-02	Rice	cytosol	87.75	80.09
PGSC0003DMT400050663	Potato	cytosol	87.75	80.09
GSMUA_Achr10P...	Banana	cytosol	55.15	79.79
VIT_08s0040g02330.t01	Wine grape	cytosol	87.25	79.64
PGSC0003DMT400020968	Potato	cytosol	87.25	79.64
KXG20299	Sorghum	cytosol	87.25	79.64
KXG20296	Sorghum	cytosol	87.25	79.64
KXG20294	Sorghum	cytosol	87.25	79.64
KXG20293	Sorghum	cytosol	87.25	79.64
Zm00001d036904_P001	Maize	cytosol	87.25	79.64
PGSC0003DMT400059830	Potato	cytosol	87.25	79.46
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	87.25	79.46
Solyc06g005060.2.1	Tomato	cytosol	87.25	79.46
PGSC0003DMT400059832	Potato	cytosol	87.25	79.46
PGSC0003DMT400053547	Potato	cytosol	87.25	79.46
PGSC0003DMT400053553	Potato	cytosol	87.25	79.46
Zm00001d046449_P003	Maize	cytosol	87.01	79.42
Zm00001d037873_P010	Maize	cytosol	87.5	79.16
Zm00001d009870_P008	Maize	cytosol	87.5	79.16
Zm00001d037905_P010	Maize	cytosol	87.25	78.94
Zm00001d037877_P014	Maize	cytosol	87.25	78.94
Zm00001d037875_P014	Maize	cytosol	87.25	78.94
Zm00001d009868_P015	Maize	cytosol	87.01	78.71
TraesCS4B01G196900.1	Wheat	golgi	86.03	78.52
HORVU4Hr1G056740.1	Barley	cytosol	86.03	78.52
TraesCS5B01G418200.1	Wheat	cytosol	86.03	78.52
TraesCS5B01G418100.1	Wheat	cytosol	86.03	78.52
AT1G07920.1	Thale cress	cytosol	86.27	78.4
Bra002483.1-P	Field mustard	cytosol	86.27	78.4
Bra018669.1-P	Field mustard	cytosol	86.27	78.4
Bra020253.1-P	Field mustard	cytosol	86.27	78.4
Bra031602.1-P	Field mustard	cytosol	86.27	78.4
AT5G60390.2	Thale cress	cytosol	86.27	78.4
AT1G07940.3	Thale cress	cytosol	86.27	78.4
AT1G07930.1	Thale cress	cytosol	86.27	78.4
CDY09211	Canola	cytosol	82.11	78.27
CDY61938	Canola	cytosol	82.11	78.27
CDY10804	Canola	cytosol	82.11	78.27
CDY34479	Canola	cytosol	82.11	78.27
Bra018242.1-P	Field mustard	cytosol	86.03	78.17
TraesCS5A01G415600.1	Wheat	cytosol	85.54	78.08
TraesCS5A01G415400.1	Wheat	cytosol	85.54	78.08
TraesCS4A01G107700.1	Wheat	cytosol	85.54	78.08
TraesCS4A01G107600.1	Wheat	cytosol	85.54	78.08
Bra006661.1-P	Field mustard	cytosol	85.78	77.95
CDY22711	Canola	cytosol	80.64	77.05
CDY22710	Canola	cytosol	80.64	77.05
Bra031605.1-P	Field mustard	cytosol	80.64	77.05
HORVU4Hr1G056830.1	Barley	cytosol	54.9	76.45
Bra020251.1-P	Field mustard	cytosol	76.96	76.21
HORVU5Hr1G100200.3	Barley	mitochondrion	86.03	75.65
HORVU5Hr1G100700.3	Barley	plasma membrane	86.03	75.48
HORVU6Hr1G085320.3	Barley	cytosol	80.64	74.6
HORVU4Hr1G056820.1	Barley	plasma membrane	85.78	73.53
CDX70032	Canola	cytosol	61.76	73.26
CDX93604	Canola	cytosol	82.11	72.83
HORVU6Hr1G085370.1	Barley	cytosol	80.64	72.79
TraesCS4B01G196800.2	Wheat	golgi	86.03	72.67
Zm00001d009887_P001	Maize	cytosol	25.98	72.6
CDX95108	Canola	cytosol, extracellular	86.03	72.07
OQU75582	Sorghum	cytosol	22.06	72.0
OQU75597	Sorghum	cytosol	30.39	70.86
GSMUA_Achr10P...	Banana	cytosol, plastid	36.76	69.77
CDY06288	Canola	cytosol	19.36	68.7
CDY06290	Canola	cytosol	19.36	68.7
CDY69678	Canola	cytosol	19.36	68.7
CDY67376	Canola	cytosol	19.36	68.7
GSMUA_Achr2P19000_001	Banana	cytosol	12.25	64.94
Bra030707.1-P	Field mustard	cytosol	86.27	59.66
GSMUA_Achr6P02020_001	Banana	mitochondrion	50.49	59.54
CDY58828	Canola	cytosol	80.64	57.92
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	12.75	49.06
GSMUA_Achr1P00050_001	Banana	cytosol	32.11	29.77
GSMUA_Achr3P07900_001	Banana	cytosol	34.07	26.18
GSMUA_AchrUn_...	Banana	cytosol	11.27	25.14
GSMUA_Achr8P06040_001	Banana	mitochondrion	27.94	25.05
GSMUA_Achr3P24830_001	Banana	mitochondrion	27.21	24.4
GSMUA_Achr4P05390_001	Banana	cytosol	32.84	19.71
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	14.71	19.17
GSMUA_Achr9P01930_001	Banana	plastid	10.05	15.89

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr7G15510_001	EnsemblPlants:GSMUA_Achr7P15510_001	EnsemblPlants:GSMUA_Achr7T15510_001	InterPro:IPR000795
UniProt:M0THT8	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540
InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000294C5D6	:

Description

Elongation factor 1-alpha [Source:GMGC_GENE;Acc:GSMUA_Achr7G15510_001]

Coordinates

chr7:+:12398933..12403353

Molecular Weight (calculated)

45449.3 Da

IEP (calculated)

9.479

GRAVY (calculated)

-0.290

Length

408 amino acids

Sequence
(BLAST)

001: MGKEKVHINI VVIGHVDSGK STTTGHLIYK LGGIDKRLKA ERERGITIDI ALWKFETTKY YCTVIDAPGH RDFIKNMITG TSQADCAVLS IDSTTGGFEA
101: GISKDGQTRE HALLAFTLGV KQMICCCNKM DATTPKYSKA RYDEIVKEVS SYLKKIGYNP DKIPFVPISG FEGDNMIERS TNLDWYKGPT LLDALDMIQE
201: PKRPSDKPLR LPLQDVYKIG GIGTVPVGRV ETGILKPGMV VTFGPTGLTT EVKSVEMHHE ALQEAFPGDN VGFNVKNVAV KDLKRGFIGN GYAPVLDCHT
301: SHIAVKFAEL LTKIDRRSSK ELEKEPKFLK NGDAGFVKMI PTKPMVVETF SEYPPLGRFA VRDMRQTVAW VLSRQLRRRI LLVPRSPKLL PRRNEDSCCC
401: INGSYHAR

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.