Factsheet for GSMUA_Achr6P06690_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	32.59	55.74
VIT_17s0000g09370.t01	Wine grape	plastid	81.79	52.67
KRH54307	Soybean	mitochondrion, plastid	80.19	52.4
KRH63638	Soybean	endoplasmic reticulum, nucleus, plastid	79.23	51.67
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	78.27	51.36
Solyc03g112150.1.1	Tomato	plastid	78.27	51.36
Bra013458.1-P	Field mustard	plastid	76.36	50.85
Bra033753.1-P	Field mustard	plastid	77.0	50.84
Bra038805.1-P	Field mustard	plastid	76.68	50.53
EES05366	Sorghum	plastid	74.76	50.21
PGSC0003DMT400092196	Potato	plastid	76.36	50.1
AT4G20360.1	Thale cress	plastid	76.04	50.0
Os02t0595700-01	Rice	plastid	74.12	49.68
Zm00001d017092_P001	Maize	plastid	73.8	49.68
TraesCS6D01G193000.1	Wheat	nucleus, plastid	74.44	49.57
TraesCS6A01G209800.1	Wheat	plastid	74.12	49.36
Zm00001d050969_P001	Maize	plastid	73.48	49.36
TraesCS6B01G238600.1	Wheat	plastid	73.48	49.15
Solyc06g071790.2.1	Tomato	nucleus, plastid	68.37	47.56
Bra020926.1-P	Field mustard	plastid	63.58	46.6
CDY49022	Canola	plastid	47.6	43.44
HORVU6Hr1G053680.5	Barley	plastid	70.29	42.8
CDY49485	Canola	plastid	46.65	42.69
CDX82758	Canola	plastid	36.1	39.79
CDY31442	Canola	plastid	38.98	39.1
CDY54570	Canola	plastid	38.98	39.1
CDX98668	Canola	plastid	34.5	38.99
CDX78988	Canola	plastid	37.06	38.41
CDX94002	Canola	plastid	34.5	38.16
GSMUA_Achr3P24830_001	Banana	mitochondrion	52.08	35.82
GSMUA_Achr8P06040_001	Banana	mitochondrion	51.76	35.6
GSMUA_Achr9P01930_001	Banana	plastid	25.56	31.01
GSMUA_Achr5P24440_001	Banana	cytosol	11.5	28.35
GSMUA_Achr3P17840_001	Banana	cytosol	9.9	20.39
GSMUA_Achr10P...	Banana	cytosol, plastid	13.74	20.0
GSMUA_Achr2P19000_001	Banana	cytosol	4.79	19.48
GSMUA_Achr10P...	Banana	cytosol	16.29	18.09
GSMUA_Achr10P...	Banana	cytosol	15.02	16.85
GSMUA_Achr6P02020_001	Banana	mitochondrion	17.25	15.61
GSMUA_AchrUn_...	Banana	cytosol	9.9	14.83
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	19.17	14.71
GSMUA_Achr1P00050_001	Banana	cytosol	19.81	14.09
GSMUA_Achr3P07900_001	Banana	cytosol	23.64	13.94
GSMUA_Achr4P05390_001	Banana	cytosol	20.45	9.41
GSMUA_Achr6P04090_001	Banana	cytosol	5.43	8.63

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G06690_001
EnsemblPlants:GSMUA_Achr6P06690_001	EnsemblPlants:GSMUA_Achr6T06690_001	InterPro:IPR000795	UniProt:M0T4R8	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PANTHER:PTHR43721	PANTHER:PTHR43721:SF6	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000296537E	SEG:seg	:	:

Description

Elongation factor Tu, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G06690_001]

Coordinates

chr6:+:4535781..4537492

Molecular Weight (calculated)

33716.9 Da

IEP (calculated)

9.019

GRAVY (calculated)

-0.078

Length

313 amino acids

Sequence
(BLAST)

001: MVGAQKALLP SSYAKPRTPK SPAISSSNTN FLSSSFSLST GNLCYDTAAS SQQRLRRGSG GLLVVRAARG KFERKKPHVN IGTIGHVDHG KTTLTAALTM
101: ALAANMITGA AQMDGAILVV SGADGPMPQT KEHILLAKQV GVPNMVVFLN KQDQVDDEEL LQLVELEVRE LLSSYEFPGD DVPIISGSAL LALEALMANP
201: SIKRGENSWP GTITPHTKFV AIVYVLKKEE GGRHSPFFSG YRPQFYMRTT DVTGRVTSIM NDKDEEAKMV MPGDRVKMVV ELIVPVACEQ GMRFAIREGG
301: KTVGAGVIQS IIE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.