Factsheet for VIT_17s0000g09370.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	35.39	93.99
KRH54307	Soybean	mitochondrion, plastid	85.19	86.43
KRH63638	Soybean	endoplasmic reticulum, nucleus, plastid	84.77	85.83
CDX82758	Canola	plastid	50.0	85.56
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	83.95	85.53
Solyc03g112150.1.1	Tomato	plastid	83.74	85.33
PGSC0003DMT400092196	Potato	plastid	83.13	84.7
Solyc06g071790.2.1	Tomato	nucleus, plastid	78.4	84.67
CDX98668	Canola	plastid	48.15	84.48
Bra013458.1-P	Field mustard	plastid	81.69	84.47
Bra033753.1-P	Field mustard	plastid	82.3	84.39
Bra038805.1-P	Field mustard	plastid	82.3	84.21
VIT_14s0066g00220.t01	Wine grape	plastid	84.36	84.19
Bra020926.1-P	Field mustard	plastid	73.66	83.84
AT4G20360.1	Thale cress	plastid	80.66	82.35
CDX94002	Canola	plastid	47.94	82.33
CDY49022	Canola	plastid	58.02	82.22
CDY54570	Canola	plastid	52.67	82.05
CDY49485	Canola	plastid	57.61	81.87
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	52.67	81.79
CDX78988	Canola	plastid	50.82	81.79
CDY31442	Canola	plastid	51.65	80.45
EES05366	Sorghum	plastid	75.1	78.33
Zm00001d017092_P001	Maize	plastid	74.9	78.28
Zm00001d050969_P001	Maize	plastid	74.9	78.11
Os02t0595700-01	Rice	plastid	74.9	77.94
TraesCS6B01G238600.1	Wheat	plastid	74.49	77.35
TraesCS6D01G193000.1	Wheat	nucleus, plastid	74.69	77.23
TraesCS6A01G209800.1	Wheat	plastid	74.49	77.02
HORVU6Hr1G053680.5	Barley	plastid	69.75	65.95
VIT_07s0104g00600.t01	Wine grape	mitochondrion	56.79	61.47
VIT_17s0000g09140.t01	Wine grape	cytosol	17.7	53.75
VIT_05s0029g00030.t01	Wine grape	cytosol	13.79	51.15
VIT_06s0004g03240.t01	Wine grape	cytosol	26.75	29.08
VIT_08s0040g02330.t01	Wine grape	cytosol	26.75	29.08
VIT_13s0019g03920.t01	Wine grape	cytosol	26.54	28.35
VIT_19s0014g04110.t01	Wine grape	cytosol	7.0	28.1
VIT_06s0004g03220.t01	Wine grape	cytosol	27.16	25.48
VIT_12s0034g01800.t01	Wine grape	cytosol	18.93	24.93
VIT_17s0000g02860.t01	Wine grape	plastid	25.72	24.08
VIT_03s0017g00530.t01	Wine grape	cytosol	26.13	16.71

Protein Annotations

EntrezGene:100244975	wikigene:100244975	MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	ProteinID:CCB42931
ProteinID:CCB42931.1	InterPro:EFTU_2	InterPro:EFTu-like_2	UniProt:F6GTR5	EMBL:FN594950	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	EntrezGene:LOC100244975	wikigene:LOC100244975
HAMAP:MF_00118_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF6	SUPFAM:SSF50447	SUPFAM:SSF50465
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI00019851E8	ArrayExpress:VIT_17s0000g09370	EnsemblPlantsGene:VIT_17s0000g09370
EnsemblPlants:VIT_17s0000g09370.t01	unigene:Vvi.7275	RefSeq:XP_002277301	RefSeq:XP_002277301.1	SEG:seg	:

Description

Elongation factor Tu [Source:UniProtKB/TrEMBL;Acc:F6GTR5]

Coordinates

chr17:-:10957599..10959197

Molecular Weight (calculated)

52695.5 Da

IEP (calculated)

6.686

GRAVY (calculated)

-0.171

Length

486 amino acids

Sequence
(BLAST)

001: MAISATSASA STKLIYPSPP PSSPSSSTTL ALCTPSPRTR KHPSNLSSSF LSKPSTTFLL TPTTTATTTQ RRSFTVRAAR GKFERNKPHL NIGTIGHVDH
101: GKTTLTAALT MALAAMGNSA PKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA
201: KQVGVPNMVV FLNKQDQVDD EELLQLVELE VRELLSSYEF PGDDVPIISG SALLALEALM ANPSIKRGEN QWVDKIYELM DSVDSYIPIP QRQTDLPFLL
301: AIEDVFSITG RGTVATGRVE RGTIKVGETV DIVGLKDTRS TTVTGVEMFQ KILDEALAGD NVGILLRGVQ KADIQRGMVL AKPGTITPHT KFAAIVYVLK
401: KEEGGRHSPF FAGYRPQFYM RTTDVTGKVT SIMNDKDEES KMVMPGDRVK MVVELIMPVA CEQGMRFAIR EGGKTVGAGV IQSIIE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.