Factsheet for Bra013458.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78988	Canola	plastid	63.62	99.01
CDX82758	Canola	plastid	59.57	98.59
Bra038805.1-P	Field mustard	plastid	96.6	95.58
AT4G20360.1	Thale cress	plastid	94.68	93.49
GSMUA_AchrUn_...	Banana	cytosol	36.38	93.44
Bra020926.1-P	Field mustard	plastid	84.68	93.21
Bra033753.1-P	Field mustard	plastid	92.13	91.35
KRH57147	Soybean	plastid	84.04	82.46
Solyc06g071790.2.1	Tomato	nucleus, plastid	78.51	82.0
VIT_17s0000g09370.t01	Wine grape	plastid	84.47	81.69
Solyc03g112150.1.1	Tomato	plastid	82.77	81.55
PGSC0003DMT400092196	Potato	plastid	82.55	81.34
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	82.34	81.13
KRH03857	Soybean	plastid	75.53	79.42
Zm00001d017092_P001	Maize	plastid	76.81	77.63
TraesCS6B01G238600.1	Wheat	plastid	77.23	77.56
EES05366	Sorghum	plastid	76.81	77.47
TraesCS6D01G193000.1	Wheat	nucleus, plastid	77.45	77.45
Zm00001d050969_P001	Maize	plastid	76.6	77.25
TraesCS6A01G209800.1	Wheat	plastid	77.23	77.23
Os02t0595700-01	Rice	plastid	76.38	76.87
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	50.85	76.36
HORVU6Hr1G053680.5	Barley	plastid	72.55	66.34
Bra036234.1-P	Field mustard	mitochondrion	58.94	61.01
Bra000853.1-P	Field mustard	mitochondrion	58.72	60.93
Bra031601.1-P	Field mustard	cytosol	12.77	30.3
Bra006661.1-P	Field mustard	cytosol	27.66	28.95
Bra020253.1-P	Field mustard	cytosol	27.45	28.73
Bra002483.1-P	Field mustard	cytosol	27.45	28.73
Bra018669.1-P	Field mustard	cytosol	27.45	28.73
Bra031602.1-P	Field mustard	cytosol	27.45	28.73
Bra031605.1-P	Field mustard	cytosol	25.96	28.57
Bra018242.1-P	Field mustard	cytosol	27.23	28.51
Bra020251.1-P	Field mustard	cytosol	24.68	28.16
Bra030707.1-P	Field mustard	cytosol	27.45	21.86
Bra006069.1-P	Field mustard	cytosol	26.81	20.0
Bra028577.1-P	Field mustard	cytosol	27.02	17.4
Bra016571.1-P	Field mustard	cytosol	24.26	16.08

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra013458	EnsemblPlants:Bra013458.1	EnsemblPlants:Bra013458.1-P
InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS
InterPro:IPR000795	UniProt:M4DAE8	HAMAP:MF_00118_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143
PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721	PANTHER:PTHR43721:SF13
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI00025469F7
SEG:seg	:	:	:	:	:

Description

AT4G20360 (E=5e-212) ATRAB8D, ATRABE1B | ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B); GTP binding / GTPase/ translation elongation factor

Coordinates

chrA01:+:5799875..5801287

Molecular Weight (calculated)

51186.5 Da

IEP (calculated)

6.266

GRAVY (calculated)

-0.168

Length

470 amino acids

Sequence
(BLAST)

001: MAISSPAYSR LISPYSSPSP SLSPAISTSV KLNLSSSFLP SYSLSTTPSA SQSPRRSFTV RAARGKFERK KPHVNIGTIG HVDHGKTTLT AALTMALASM
101: GNSVAKKYDE IDAAPEERAR GITINTATVE YATENRHYAH VDCPGHADYV KNMITGAAQR DGAILVVSGA DGPMPQTKEH ILLAKQVGVP DMVVFLNKED
201: QVDDAELLEL VELEVRELLS SYEFNGDDIP IISGSALLAV ETLTENPNVK RGDNKWVDKI YELMDAVDSY IPIPQRQTEL PFLLAVEDVF SITGRGTVAT
301: GRVERGTVKV GETVDLVGLR ETRNYTVTGV EMFQKILDEA LAGDNVGLLL RGIQKADIQR GMVLAKPGSI TPHTKFEAIV YVLKKEEGGR HSPFFAGYRP
401: QFYMRTTDVT GKVTKIMNDK DEESKMVMPG DRVKIVVELI VPVACEQGMR FAIREGGKTV GAGVIQSIIE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.