Factsheet for PGSC0003DMT400046837

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112150.1.1	Tomato	plastid	98.32	98.32
PGSC0003DMT400092196	Potato	plastid	91.19	91.19
GSMUA_AchrUn_...	Banana	cytosol	33.96	88.52
VIT_17s0000g09370.t01	Wine grape	plastid	85.53	83.95
Bra033753.1-P	Field mustard	plastid	82.39	82.91
KRH57147	Soybean	plastid	83.23	82.88
Bra013458.1-P	Field mustard	plastid	81.13	82.34
Bra038805.1-P	Field mustard	plastid	81.97	82.32
AT4G20360.1	Thale cress	plastid	81.76	81.93
CDX82758	Canola	plastid	48.64	81.69
Bra020926.1-P	Field mustard	plastid	72.12	80.56
CDX98668	Canola	plastid	46.54	80.14
CDY49022	Canola	plastid	57.23	79.59
CDY49485	Canola	plastid	56.81	79.24
EES05366	Sorghum	plastid	76.94	78.76
KRH03857	Soybean	plastid	73.79	78.75
CDX94002	Canola	plastid	46.54	78.45
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	51.36	78.27
Zm00001d017092_P001	Maize	plastid	76.1	78.06
CDY54570	Canola	plastid	50.94	77.88
Os02t0595700-01	Rice	plastid	76.1	77.73
Zm00001d050969_P001	Maize	plastid	75.89	77.68
CDX78988	Canola	plastid	48.85	77.15
TraesCS6B01G238600.1	Wheat	plastid	74.84	76.28
CDY31442	Canola	plastid	49.9	76.28
TraesCS6A01G209800.1	Wheat	plastid	75.05	76.17
TraesCS6D01G193000.1	Wheat	nucleus, plastid	75.05	76.17
HORVU6Hr1G053680.5	Barley	plastid	70.44	65.37
PGSC0003DMT400037909	Potato	plastid	58.28	61.64
PGSC0003DMT400009804	Potato	mitochondrion	58.07	61.56
PGSC0003DMT400020968	Potato	cytosol	27.25	29.08
PGSC0003DMT400053547	Potato	cytosol	27.25	29.02
PGSC0003DMT400053553	Potato	cytosol	27.25	29.02
PGSC0003DMT400059830	Potato	cytosol	27.25	29.02
PGSC0003DMT400059832	Potato	cytosol	27.25	29.02
PGSC0003DMT400050663	Potato	cytosol	26.83	28.64
PGSC0003DMT400014425	Potato	cytosol	22.64	22.0

Protein Annotations

EntrezGene:102584165	EntrezGene:102585459	MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTU_2
InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795
UniProt:M1BJQ9	HAMAP:MF_00118_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144
EnsemblPlantsGene:PGSC0003DMG400018190	PGSC:PGSC0003DMG400018190	EnsemblPlants:PGSC0003DMT400046837	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR43721	PANTHER:PTHR43721:SF13	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
InterPro:Transl_elong_EFTu/EF1A_bac/org	UniParc:UPI0002949702	RefSeq:XP_006344478.1	RefSeq:XP_006347424.1	SEG:seg	:

Description

Elongation factor TuA, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400018190]

Coordinates

chr3:+:51906116..51907990

Molecular Weight (calculated)

51885.6 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.160

Length

477 amino acids

Sequence
(BLAST)

001: MASISAASAT ATSSTKLLNP SNPLLPSATK PSKLILSSSF TPNLSTLFLH SPAATSPATH HQRRFTVRAA RGKFERKKPH VNIGTIGHVD HGKTTLTAAL
101: TMALASMGNS TPKKYDEIDA APEERARGIT INTATVEYET ENRHYAHVDC PGHADYVKNM ITGAAQMDGA ILVVSGADGP MPQTKEHILL AKQVGVPNMV
201: VFLNKQDQVD DEELLELVEL EVRELLSSYE FPGDDIPIVS GSALLALEAL MANPSIKRGE NEWVDKIFTL MDNVDNYIPI PQRQTELPFL MAIEDVFSIT
301: GRGTVATGRV ERGTVRVGET VDIVGLRDTR STTVTGVEMF QKILDEAMAG DNVGLLLRGI QKIDIQRGMV LAKPGTITPH TKFEALVYVL KKEEGGRHSP
401: FFSGYRPQFY MRTTDVTGKV TSITTDKGDE SKMVMPGDRV NLVVELIMPV ACEQGMRFAI REGGKTVGAG VIQKILE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.