Factsheet for PGSC0003DMT400014425

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60492	Soybean	cytosol	74.13	72.08
KRH41785	Soybean	cytosol, nucleus	73.93	72.02
HORVU2Hr1G012860.1	Barley	cytosol	69.65	70.23
VIT_17s0000g02860.t01	Wine grape	plastid	74.13	70.13
GSMUA_Achr3P07900_001	Banana	cytosol	71.69	66.29
EES10540	Sorghum	cytosol	70.06	63.94
TraesCS2A01G076700.1	Wheat	cytosol, golgi, nucleus	69.25	63.79
TraesCS2B01G091600.1	Wheat	cytosol	69.25	63.79
TraesCS2D01G075300.1	Wheat	cytosol	69.25	63.79
CDX96737	Canola	cytosol	67.21	63.71
Zm00001d004172_P005	Maize	cytosol	70.06	63.59
CDY19192	Canola	cytosol	69.86	63.17
AT1G18070.3	Thale cress	cytosol	69.86	63.17
Os04t0270100-01	Rice	cytosol	59.27	62.18
CDX83874	Canola	endoplasmic reticulum	64.97	61.58
CDY21721	Canola	cytosol	70.26	59.9
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	70.47	59.25
CDY26187	Canola	golgi, vacuole	69.86	58.63
Os02t0456500-01	Rice	cytosol	30.14	57.14
Zm00001d025100_P005	Maize	cytosol	63.14	55.26
Bra016571.1-P	Field mustard	cytosol	66.4	45.98
PGSC0003DMT400050663	Potato	cytosol	30.96	34.0
PGSC0003DMT400020968	Potato	cytosol	30.55	33.56
PGSC0003DMT400053553	Potato	cytosol	30.55	33.48
PGSC0003DMT400059830	Potato	cytosol	30.55	33.48
PGSC0003DMT400059832	Potato	cytosol	30.55	33.48
PGSC0003DMT400053547	Potato	cytosol	30.55	33.48
PGSC0003DMT400092196	Potato	plastid	22.2	22.85
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	22.0	22.64
PGSC0003DMT400009804	Potato	mitochondrion	19.55	21.33
PGSC0003DMT400037909	Potato	plastid	19.55	21.29

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS	InterPro:IPR000795
UniProt:M1A476	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	EnsemblPlantsGene:PGSC0003DMG400005660	PGSC:PGSC0003DMG400005660
EnsemblPlants:PGSC0003DMT400014425	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF36	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI000296464A	SEG:seg	:	:	:	:

Description

Eukaryotic peptide chain release factor GTP-binding subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400005660]

Coordinates

chr3:-:58470737..58478753

Molecular Weight (calculated)

54807.6 Da

IEP (calculated)

7.238

GRAVY (calculated)

-0.153

Length

491 amino acids

Sequence
(BLAST)

001: MWHPPHQNIS DIRLGVHLGS PNRGGVYLSH LANVGDAGKS TAGGQILFLS GQVDDRTIQK YEKEAKDKSR ESWYMAYIMD TNEEERAKGK TVEVGRAHFE
101: TETTRFTILD APGHKSYIPN MISGASQADI GVLVRMVTFC HWTPWEFMNS ISGFRKCTLI FDLVILKVIS ARKGEFETGY ERGGQTREHV QLAKTLGVSK
201: LLVVVNKMDD PTVVWSKERY DDIQSKMMPF LKSSQYNVKK DVQFLPISGL LGSNMKTRVE ERVCAWWDGP CLIEALDAVE VPPRDPEGPL RMPIIDKFKD
301: LGNVVMGKTE SGSICEGDSL LMMPNKAVVK VPALFCDEDR VRYADPGENV RVRLSGIEEE DILSGFVLCS VAKPIPAVTE FVAQLQILEL LDNAIFTAGY
401: KAVLHIHAIV EECEIVELMQ QIDLKKKKPM KKTPLFVKNG AIVLCRVQVN NLICIEKFSD FPQLGRFTLR SEGKTVAVGK VTTLPTVANN A

Best Arabidopsis Sequence Match ( AT1G18070.1 )
(BLAST)

001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRMPIIDKFK DMGTVVMGKV ESGSIREGDS LVVMPNKEQV KVVAIYCDED KVKRAGPGEN LRVRITGIED
401: EDILSGFVLS SIVNPVPAVT EFVAQLQILE LLDNAIFTAG YKAILHIHAV VEECEIIELK SQIDLKTRKP MKKKVLFVKN GAAVVCRIQV TNSICIEKFS
501: DFPQLGRFTL RTEGKTIAVG KVTELLSSVS SA

Arabidopsis Description

T10F20.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.