Factsheet for Zm00001d004172_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10540	Sorghum	cytosol	95.75	96.28
HORVU2Hr1G012860.1	Barley	cytosol	78.74	87.47
TraesCS2D01G075300.1	Wheat	cytosol	82.81	84.05
TraesCS2B01G091600.1	Wheat	cytosol	82.62	83.86
TraesCS2A01G076700.1	Wheat	cytosol, golgi, nucleus	82.44	83.68
Os04t0270100-01	Rice	cytosol	72.09	83.33
Zm00001d025100_P005	Maize	cytosol	85.95	82.89
Solyc03g118990.1.1	Tomato	cytosol	10.17	78.57
GSMUA_Achr3P07900_001	Banana	cytosol	74.49	75.89
KRH41785	Soybean	cytosol, nucleus	69.87	75.0
KRH60492	Soybean	cytosol	69.87	74.85
VIT_17s0000g02860.t01	Wine grape	plastid	68.21	71.1
PGSC0003DMT400014425	Potato	cytosol	63.59	70.06
AT1G18070.3	Thale cress	cytosol	67.47	67.22
CDY19192	Canola	cytosol	67.1	66.85
CDX96737	Canola	cytosol	63.22	66.02
CDX83874	Canola	endoplasmic reticulum	61.18	63.9
CDY21721	Canola	cytosol	67.47	63.37
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	67.1	62.16
CDY26187	Canola	golgi, vacuole	67.1	62.05
Bra016571.1-P	Field mustard	cytosol	62.66	47.81
Zm00001d037882_P001	Maize	cytosol	15.71	45.95
Zm00001d009887_P001	Maize	cytosol	10.72	39.73
Zm00001d036904_P001	Maize	cytosol	30.31	36.69
Zm00001d009870_P008	Maize	cytosol	30.5	36.59
Zm00001d037873_P010	Maize	cytosol	30.5	36.59
Zm00001d006596_P001	Maize	cytosol	30.13	36.47
Zm00001d046449_P003	Maize	cytosol	30.13	36.47
Zm00001d021788_P001	Maize	cytosol, extracellular, plasma membrane, plastid	30.13	36.47
Zm00001d009868_P015	Maize	cytosol	30.31	36.36
Zm00001d037905_P010	Maize	cytosol	30.31	36.36
Zm00001d037877_P014	Maize	cytosol	30.31	36.36
Zm00001d037875_P014	Maize	cytosol	30.31	36.36
Zm00001d050969_P001	Maize	plastid	22.0	25.54
Zm00001d017092_P001	Maize	plastid	21.81	25.38
Zm00001d034856_P003	Maize	mitochondrion	20.52	24.56
Zm00001d001827_P005	Maize	cytosol	29.76	23.17
Zm00001d012846_P005	Maize	mitochondrion	18.85	22.47
Zm00001d040673_P001	Maize	mitochondrion	4.44	21.05
Zm00001d026213_P001	Maize	cytosol	29.76	19.4

Protein Annotations

EntrezGene:103646667	MapMan:17.3.2.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A0A1D6EEC1	InterPro:EFTu-like_2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
InterPro:G_TR_CS	InterPro:IPR000795	ProteinID:ONM18586.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143
PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF36
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C
InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000220F018	EnsemblPlantsGene:Zm00001d004172	EnsemblPlants:Zm00001d004172_P005	EnsemblPlants:Zm00001d004172_T005	SEG:seg

Description

Putative translation elongation/initiation factor family protein

Coordinates

chr2:+:89151605..89175203

Molecular Weight (calculated)

59301.3 Da

IEP (calculated)

5.690

GRAVY (calculated)

-0.257

Length

541 amino acids

Sequence
(BLAST)

001: MEHDAHAEAP PHAVPPPEVA TVDDWARDDA EPMSVESGVA AAELTAADSG ADAPLAPAPS AAVAAEGVKE IQSSLQSLEL KTNVATQEGA HVVEDDVDET
101: KRHLNVVFIG HVDAGKSTTG GQILFLSGQV DDRTIQKYEK EAKDKSRESW YMAYIMDTNE EERVKGKTVE VGRAHFETEH TRFTILDAPG HKSYVPNMIS
201: GASQADIGVL VISARKGEFE TGYERGGQTR EHVLLAKTLG VAKLVVVINK MDEPTVKWSK ERYDEIEAKM VPFLKSSGYN VKKDVQFLPI SGLVGTNMKT
301: RMDKSICSWW DGPCLFEVLD RIEIPLRDPK GPVRMPIIDK YKDMGTVVMG KIEAGTIREG DSLLIMPNKS HVKVIGLNLD ESKVRRAGPA ENVRVKLSGV
401: EEEDVMSGFV LSSVANPVGA VNEFIAQLQI LELLDNAIFT AGYKAVLHIH SVVEECEIVE LIEEIDMKKK KGDPKKKKPK RKPLFVKNGA IVVCRIQVNN
501: LICIEKFSDF PQLGRFTLRT EGKTVAVGKV VDVPPAGSPT F

Best Arabidopsis Sequence Match ( AT1G18070.1 )
(BLAST)

001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRMPIIDKFK DMGTVVMGKV ESGSIREGDS LVVMPNKEQV KVVAIYCDED KVKRAGPGEN LRVRITGIED
401: EDILSGFVLS SIVNPVPAVT EFVAQLQILE LLDNAIFTAG YKAILHIHAV VEECEIIELK SQIDLKTRKP MKKKVLFVKN GAAVVCRIQV TNSICIEKFS
501: DFPQLGRFTL RTEGKTIAVG KVTELLSSVS SA

Arabidopsis Description

T10F20.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.