Factsheet for Zm00001d026213_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12776	Sorghum	cytosol	75.3	92.18
Os04t0596500-02	Rice	cytosol	61.2	77.44
Os01t0116600-01	Rice	cytosol	60.48	76.64
GSMUA_Achr1P00050_001	Banana	cytosol	40.24	75.91
TraesCS2B01G465300.1	Wheat	cytosol	61.81	75.33
TraesCS2D01G443300.1	Wheat	cytosol	61.45	75.0
TraesCS2A01G444100.1	Wheat	cytosol	61.45	74.89
HORVU2Hr1G102800.6	Barley	cytosol, plastid	63.73	70.07
Solyc12g036410.1.1	Tomato	cytosol	39.04	55.1
CDX78392	Canola	cytosol	41.33	54.62
CDY61091	Canola	cytosol	8.8	54.48
Bra006069.1-P	Field mustard	cytosol	41.2	54.29
Solyc03g119290.2.1	Tomato	cytosol	37.95	53.57
CDX70362	Canola	cytosol	41.33	52.69
VIT_03s0017g00530.t01	Wine grape	cytosol	46.87	51.18
CDX85751	Canola	cytosol	43.01	50.0
CDY40108	Canola	cytosol	43.13	49.79
AT5G10630.4	Thale cress	cytosol	43.13	48.18
Bra028577.1-P	Field mustard	cytosol	41.33	46.99
KRH59057	Soybean	cytosol	44.7	46.78
KRH42938	Soybean	cytosol	44.22	46.63
Zm00001d001827_P005	Maize	cytosol	38.07	45.47
Zm00001d037882_P001	Maize	cytosol	10.0	44.86
Zm00001d009887_P001	Maize	cytosol	7.11	40.41
Zm00001d021788_P001	Maize	cytosol, extracellular, plasma membrane, plastid	18.55	34.45
Zm00001d046449_P003	Maize	cytosol	18.43	34.23
Zm00001d006596_P001	Maize	cytosol	18.43	34.23
Zm00001d036904_P001	Maize	cytosol	18.43	34.23
Zm00001d009870_P008	Maize	cytosol	18.31	33.7
Zm00001d037873_P010	Maize	cytosol	18.31	33.7
Zm00001d037905_P010	Maize	cytosol	18.31	33.7
Zm00001d009868_P015	Maize	cytosol	18.19	33.48
Zm00001d037875_P014	Maize	cytosol	18.19	33.48
Zm00001d037877_P014	Maize	cytosol	18.19	33.48
Zm00001d004172_P005	Maize	cytosol	19.4	29.76
Zm00001d034856_P003	Maize	mitochondrion	15.18	27.88
Zm00001d025100_P005	Maize	cytosol	18.31	27.09
Zm00001d017092_P001	Maize	plastid	14.82	26.45
Zm00001d012846_P005	Maize	mitochondrion	14.34	26.21
Zm00001d050969_P001	Maize	plastid	14.7	26.18
Zm00001d040673_P001	Maize	mitochondrion	2.65	19.3

Protein Annotations

KEGG:00500+2.4.1.12	MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.20.28.140	Gene3D:2.40.30.10	Gene3D:3.30.40.10
Gene3D:3.40.50.300	UniProt:A0A1D6JDE8	ProteinID:AQK45853.1	InterPro:CES_Znf_RING	InterPro:ExoRNase_PH_dom1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003746	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0006412	GO:GO:0006413	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0046872	InterPro:IPR000795	InterPro:IPR001876	InterPro:IPR013083	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF01138	PFAM:PF03143	PFAM:PF14569	PRINTS:PR00315	ScanProsite:PS01358
PFscan:PS50199	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF219	SMART:SM00547	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	SUPFAM:SSF57850	SUPFAM:SSF90209	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000842FB34	EnsemblPlantsGene:Zm00001d026213	EnsemblPlants:Zm00001d026213_P001	EnsemblPlants:Zm00001d026213_T001
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:

Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein

Coordinates

chr10:-:141041899..141053154

Molecular Weight (calculated)

90628.9 Da

IEP (calculated)

7.507

GRAVY (calculated)

-0.282

Length

830 amino acids

Sequence
(BLAST)

001: MCRPCYEYNR KDDTQACPQC KANKRHQGLE VKPRPTVKCV LGHDFILHFP VDNYLCDANR SCELPNNLYL LVAQFFLVEV WALDTMMTTT SHLAGTLTSR
101: WHSALLVHSI MQTGPTTVAS GFAYAKFGKT KVIVSVKMPR KVVSGPDYDD DYDDYDEYDD DDDDDDEYDE TRYGNNTPVM TGKETLKNSS STVSVHWTCS
201: MCTFSNHESM VYCEMCGVFR ETFVKSAKDG LLKDTAVAVS SEPRTSAASK NDSAKAPVKT RAVNSDGDSM RKHASMSYDK ANSTQLPSAG SSLGAEKKKK
301: TPVLSEEVPV ERIALLASDG FQSKGNQNSG ASSSSQNDNV IQKLSSDVGQ LNVNKNNVNV TKSCLPDEYK PEKWMLADLE SRALSQLNLA IVGHHPTYFV
401: NTVGHVDSGK STLSGRLLHL LGRISKKYMH KNEKESKEKG KGSFAFAWAM DESSEERERG VTMTVAVAYL ETKKFRVVLL DSPGHKDFVP NMISGATQAD
501: AAILVVDAST GSFEAGMDGE GGKSVGQTKE HAQLVRSFGV EQLVVAVNKM DAVDYAKERF DFIKLQLGSF LRSCNFKDSA ITWIPLSAVE NQNLIKAPSD
601: ARLTSWYQGF CLLDAIDFLQ LPSRDVSKPL IIPICDVIKS QSTGQLAAYG KLETGAIQIG SKVLVLPSGQ EATVKAIERD SNSCTVARAG DNVAICLQGI
701: DGKQLIPGGV LCHPGFPVPV ANHLELKVLV LDITTPILVG SQVEFHIHHV KEAARVTKIV ALLDKTGKPS KSAPRFLKSK QNSVIQVTLD GAVCVQEFSK
801: SRALGRAYLR SAGRTIAVGV VNRIIGQDQN

Best Arabidopsis Sequence Match ( AT5G10630.2 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTA PFKFDAPSPD
101: DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM
201: SLIGETENSS DIKIRGPKSQ SKHKPEEWML LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER
301: ERGITMTVAV AYFNSKRHHV VLLDSPGHKD FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD
401: LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS
501: KVMVMPSGDQ GTIRSLERDS QACTIARAGD NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA
601: MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.