Factsheet for Os04t0596500-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0116600-01	Rice	cytosol	97.26	97.4
TraesCS2D01G443300.1	Wheat	cytosol	82.32	79.41
TraesCS2B01G465300.1	Wheat	cytosol	82.16	79.15
TraesCS2A01G444100.1	Wheat	cytosol	82.16	79.15
GSMUA_Achr1P00050_001	Banana	cytosol	50.91	75.91
EES12776	Sorghum	cytosol	77.59	75.07
HORVU2Hr1G102800.6	Barley	cytosol, plastid	81.4	70.73
Zm00001d026213_P001	Maize	cytosol	77.44	61.2
CDY61091	Canola	cytosol	11.13	54.48
CDX78392	Canola	cytosol	51.68	53.98
Bra006069.1-P	Field mustard	cytosol	51.83	53.97
Solyc12g036410.1.1	Tomato	cytosol	48.17	53.74
Solyc03g119290.2.1	Tomato	cytosol	47.1	52.55
CDX70362	Canola	cytosol	51.98	52.38
VIT_03s0017g00530.t01	Wine grape	cytosol	58.99	50.92
Os04t0677800-02	Rice	cytosol	51.07	49.12
CDX85751	Canola	cytosol	53.35	49.02
CDY40108	Canola	cytosol	53.66	48.96
AT5G10630.4	Thale cress	cytosol	53.66	47.38
Bra028577.1-P	Field mustard	cytosol	51.22	46.03
KRH59057	Soybean	cytosol	55.34	45.78
KRH42938	Soybean	cytosol	54.73	45.62
Os02t0456500-01	Rice	cytosol	14.18	35.91
Os03t0178000-02	Rice	cytosol	24.09	35.35
Os03t0177900-01	Rice	plasma membrane	24.09	35.35
Os03t0177500-01	Rice	cytosol	24.09	35.35
Os03t0177400-01	Rice	cytosol	24.09	35.35
Os04t0270100-01	Rice	cytosol	22.26	31.2
Os03t0851100-01	Rice	mitochondrion	18.29	26.49
Os02t0595700-01	Rice	plastid	18.45	25.91

Protein Annotations

MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EntrezGene:4336848	EMBL:AK100658
ProteinID:BAF15647.1	ProteinID:BAS90792.1	ProteinID:EEE61596.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0046872	InterPro:IPR000795	InterPro:IPR001876	EnsemblPlantsGene:Os04g0596500	EnsemblPlants:Os04t0596500-02	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF03143	PRINTS:PR00315	ScanProsite:PS01358	PFscan:PS51722	PANTHER:PTHR23115
PANTHER:PTHR23115:SF219	UniProt:Q0JAJ0	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	SUPFAM:SSF90209
InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000021C9FE	RefSeq:XP_015633527.1
InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:	:

Description

Non-protein coding transcript. (Os04t0596500-01);Translation elongation factor EFTu/EF1A, C-terminal domain containing protein. (Os04t0596500-02)

Coordinates

chr4:-:30085471..30093452

Molecular Weight (calculated)

71700.2 Da

IEP (calculated)

5.965

GRAVY (calculated)

-0.314

Length

656 amino acids

Sequence
(BLAST)

001: MPRKVVSGPD YDDEYDDDYD EYDEDYDDYG ETGHSDDIQH PVKEEKESSK KSSSTVPVLW RCSMCMFDNH ESMVYCEMCG VFRESFMKSA KDGSIKVHGI
101: PSDFGTPSMP KSDCTKMPVN TRTTDFDGDP EIKNASISHE KVGSTQYTSA GSSSGAGKKL KEDQSSRASS SAQNEDVAQK LSSDIQKLGL EKNEVDTAKP
201: YLPEEYKPEK WMFANEESGV LSQLNLAIVG HVDSGKSTLS GRLLHLLGRI SKKDMHKNEK EAKEKGKGSF AYAWAMDESS EERERGVTMT VAVAYLETKK
301: YRVVLLDSPG HKDFVPNMIS GATQADAAIL VVDACTGSFE AGMDGEGGKS VGQTKEHAQL IRSFGVEQLI VAVNKMDAIG YSKERFEFIK VQLGSFLRSC
401: NFKDSSVTWI PLSAVENQNL IKIPSDVRLT SWYQGFCLLD AIDSLQLPSR DVSKPLILPI CDVIKSQSTG QFAAFGKLET GAIRIGSKVL ISPCGEVAAV
501: KSIERDSNSC DIARAGDNVA VSLQGIDGSK LILGGILCNP GFPVPVSNFL ELRVLVLDVT IPILIGYQVE FHIHHVKEAA RVTKIVALLD KAGKPSKTAP
601: RFLKSKQNAV VQVTLDAPVC VQEFSKCRAL GRAFLRSSGS TIAVGVVTRV LRQDQN

Best Arabidopsis Sequence Match ( AT5G10630.2 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTA PFKFDAPSPD
101: DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM
201: SLIGETENSS DIKIRGPKSQ SKHKPEEWML LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER
301: ERGITMTVAV AYFNSKRHHV VLLDSPGHKD FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD
401: LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS
501: KVMVMPSGDQ GTIRSLERDS QACTIARAGD NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA
601: MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.