CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78392	Canola	cytosol	90.02	93.31
CDX85751	Canola	cytosol	86.33	78.71
CDY40108	Canola	cytosol	84.79	76.77
AT5G10630.4	Thale cress	cytosol	84.95	74.43
GSMUA_Achr1P00050_001	Banana	cytosol	47.62	70.45
CDY61091	Canola	cytosol	14.13	68.66
Solyc03g119290.2.1	Tomato	cytosol	52.69	58.33
Solyc12g036410.1.1	Tomato	cytosol	51.61	57.14
Os04t0596500-02	Rice	cytosol	52.38	51.98
VIT_03s0017g00530.t01	Wine grape	cytosol	60.37	51.71
Os01t0116600-01	Rice	cytosol	51.92	51.6
KRH59057	Soybean	cytosol	61.6	50.57
KRH42938	Soybean	cytosol	60.98	50.44
EES12776	Sorghum	cytosol	52.38	50.3
TraesCS2D01G443300.1	Wheat	cytosol	51.92	49.71
TraesCS2A01G444100.1	Wheat	cytosol	51.92	49.63
GSMUA_Achr4P05390_001	Banana	cytosol	51.77	49.56
TraesCS2B01G465300.1	Wheat	cytosol	51.46	49.19
CDY09214	Canola	cytosol	11.52	46.88
EES13106	Sorghum	cytosol	50.08	46.44
TraesCS2A01G592500.1	Wheat	cytosol	48.85	46.42
Os04t0677800-02	Rice	cytosol	48.08	45.89
HORVU2Hr1G102800.6	Barley	cytosol, plastid	51.61	44.5
TraesCS2B01G591700.6	Wheat	cytosol	48.23	44.1
Zm00001d001827_P005	Maize	cytosol	46.24	43.31
HORVU2Hr1G119310.19	Barley	cytosol	45.62	43.11
CDY06287	Canola	cytosol	14.9	42.73
Zm00001d026213_P001	Maize	cytosol	52.69	41.33
CDY06289	Canola	cytosol	16.13	41.02
CDY67375	Canola	cytosol	17.2	40.29
TraesCS2D01G562000.1	Wheat	cytosol	49.0	39.14
CDX88757	Canola	cytosol	21.81	35.41
CDY22711	Canola	cytosol	22.89	34.89
CDY22710	Canola	cytosol	22.89	34.89
CDY10804	Canola	cytosol	22.58	34.35
CDY09211	Canola	cytosol	22.58	34.35
CDY61938	Canola	cytosol	22.58	34.35
CDY34479	Canola	cytosol	22.58	34.35
CDX95108	Canola	cytosol, extracellular	24.12	32.24
CDX93604	Canola	cytosol	22.73	32.17
CDX96737	Canola	cytosol	24.42	30.7
CDX83874	Canola	endoplasmic reticulum	23.35	29.34
CDY19192	Canola	cytosol	24.42	29.28
CDY21721	Canola	cytosol	24.73	27.95
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	24.88	27.74
CDX70032	Canola	cytosol	14.59	27.62
CDY26187	Canola	golgi, vacuole	24.58	27.35
CDX90912	Canola	mitochondrion	18.74	26.93
CDY17978	Canola	mitochondrion	18.59	26.71
CDY22085	Canola	mitochondrion	18.59	26.59
CDY21923	Canola	mitochondrion	18.43	26.32
CDY58828	Canola	cytosol	22.89	26.23
CDX82758	Canola	plastid	11.37	26.06
CDX98668	Canola	plastid	10.91	25.63
CDX94002	Canola	plastid	10.91	25.09
CDY49022	Canola	plastid	12.75	24.2
CDX78988	Canola	plastid	11.06	23.84
CDY49485	Canola	plastid	12.44	23.68
CDY54570	Canola	plastid	11.21	23.4
CDY31442	Canola	plastid	11.21	23.4
CDY06288	Canola	cytosol	3.99	22.61
CDY67376	Canola	cytosol	3.99	22.61
CDY69678	Canola	cytosol	3.99	22.61
CDY06290	Canola	cytosol	3.99	22.61
CDY62618	Canola	endoplasmic reticulum, mitochondrion	9.68	16.89

Protein Annotations

MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.20.28.140	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078C0P7
EnsemblPlants:CDX70362	ProteinID:CDX70362	ProteinID:CDX70362.1	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00140144001
InterPro:IPR000795	InterPro:IPR001876	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144
PRINTS:PR00315	ScanProsite:PS01358	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF219	SUPFAM:SSF50447
SUPFAM:SSF50465	SUPFAM:SSF52540	SUPFAM:SSF90209	InterPro:TF_GTP-bd_dom	TMHMM:TMhelix	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0004EE5C3D	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg

Description

BnaC03g04460D

Coordinates

chrLK031791:+:34178..37108

Molecular Weight (calculated)

71344.6 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.360

Length

651 amino acids

Sequence
(BLAST)

001: MPRKGFSNFD DYDDGFDDGD AYDDDYDDDE HEEAEHKEVK IAWRCGICTY DNDESMNACD ICGAIRHPVA GGNQTINNNT VILKFLFQSN KDFPFFFFFF
101: FLISIGLSSM KQKERQYLSE QNPVKKERDR SETSSQGRSN ANVGSIKSGK SLPKPKADTS HETNSSSKNM EASESLTGSM NKMSLAGETE TSRDVKIRSA
201: RSKSNHKPEE WMLLDKESDT LTQLNLAIVG HVDSGKSTLS GRLLHLLGRI SQKQMHKFEK EAKLQGKGSF AYAWALDESA EERERGITMT VAVAYFNTKR
301: HHVVLLDSPG HKDFVPNMIA GATQADAAIL VVDASIGAFE AGFDNLKGQT REHARVLRGF GVEQVIVAVN KMDIVGYSKD RFDLIRQHVG SFLQSCRFKE
401: SSLTWVPLSA MENQNLASAP SESRLSSWYQ GPCLLDAVDS VNSPGRDVSK PLLMPICDVV RSNSHGQVSA CGKLEAGAVR SGSKVMVMPS GEQGTVRSLE
501: RDSQGCTIAR AGDNVAIALQ GIDANQVMAG GVLCHPDYPV SVATHLELMV LVLEGATPIL LGSQLEFHVH HAKEAATVVK LAAMLDPKTG EPTKKSPRCL
601: TAKQSAMLEV SLHYPVCVET FSESRALGRV FLRSSGRTVA MGKVTRIIQD S

Best Arabidopsis Sequence Match ( AT5G10630.2 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTA PFKFDAPSPD
101: DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM
201: SLIGETENSS DIKIRGPKSQ SKHKPEEWML LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER
301: ERGITMTVAV AYFNSKRHHV VLLDSPGHKD FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD
401: LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS
501: KVMVMPSGDQ GTIRSLERDS QACTIARAGD NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA
601: MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.