CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54570	Canola	plastid	97.76	97.76
CDX98668	Canola	plastid	83.65	94.22
GSMUA_AchrUn_...	Banana	cytosol	54.81	93.44
CDX94002	Canola	plastid	83.97	92.58
CDX78988	Canola	plastid	89.1	92.05
CDX82758	Canola	plastid	81.09	89.08
CDY49022	Canola	plastid	86.54	78.72
CDY49485	Canola	plastid	86.22	78.66
AT4G20360.1	Thale cress	plastid	90.38	59.24
Solyc06g071790.2.1	Tomato	nucleus, plastid	77.24	53.56
KRH03857	Soybean	plastid	76.6	53.47
KRH57147	Soybean	plastid	79.81	51.98
VIT_17s0000g09370.t01	Wine grape	plastid	80.45	51.65
PGSC0003DMT400092196	Potato	plastid	77.24	50.52
Solyc03g112150.1.1	Tomato	plastid	76.6	50.1
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	76.28	49.9
TraesCS6B01G238600.1	Wheat	plastid	72.76	48.5
TraesCS6A01G209800.1	Wheat	plastid	72.76	48.3
TraesCS6D01G193000.1	Wheat	nucleus, plastid	72.76	48.3
Zm00001d017092_P001	Maize	plastid	71.47	47.96
Os02t0595700-01	Rice	plastid	71.47	47.75
Zm00001d050969_P001	Maize	plastid	71.15	47.64
EES05366	Sorghum	plastid	70.51	47.21
HORVU6Hr1G053680.5	Barley	plastid	72.44	43.97
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	39.1	38.98
CDX90912	Canola	mitochondrion	51.92	35.76
CDY22085	Canola	mitochondrion	51.92	35.6
CDY17978	Canola	mitochondrion	51.6	35.54
CDY21923	Canola	mitochondrion	51.28	35.09
CDY62618	Canola	endoplasmic reticulum, mitochondrion	34.94	29.22
CDX70032	Canola	cytosol	21.47	19.48
CDY06288	Canola	cytosol	6.73	18.26
CDY06290	Canola	cytosol	6.73	18.26
CDY69678	Canola	cytosol	6.73	18.26
CDY67376	Canola	cytosol	6.73	18.26
CDY22711	Canola	cytosol	20.83	15.22
CDY22710	Canola	cytosol	20.83	15.22
CDY34479	Canola	cytosol	20.51	14.95
CDY09211	Canola	cytosol	20.51	14.95
CDY10804	Canola	cytosol	20.51	14.95
CDY61938	Canola	cytosol	20.51	14.95
CDX95108	Canola	cytosol, extracellular	23.08	14.78
CDX88757	Canola	cytosol	18.91	14.71
CDX93604	Canola	cytosol	20.83	14.13
CDX96737	Canola	cytosol	19.55	11.78
CDX83874	Canola	endoplasmic reticulum	19.23	11.58
CDY67375	Canola	cytosol	10.26	11.51
CDY58828	Canola	cytosol	20.83	11.44
CDX78392	Canola	cytosol	22.76	11.31
CDX70362	Canola	cytosol	23.4	11.21
CDY19192	Canola	cytosol	18.91	10.87
CDX81859	Canola	endoplasmic reticulum, golgi, plasma membrane	19.87	10.62
CDY21721	Canola	cytosol	19.55	10.59
CDX85751	Canola	cytosol	23.4	10.22
CDY26187	Canola	golgi, vacuole	18.91	10.09
CDY40108	Canola	cytosol	22.76	9.87
CDY06289	Canola	cytosol	8.01	9.77
CDY61091	Canola	cytosol	2.56	5.97
CDY06287	Canola	cytosol	4.17	5.73
CDY09214	Canola	cytosol	2.56	5.0

Protein Annotations

MapMan:17.7.4.1	Gene3D:2.40.30.10	GO:A0A078H1S6	UniProt:A0A078H1S6	EnsemblPlants:CDY31442	ProteinID:CDY31442
ProteinID:CDY31442.1	InterPro:EFTU_2	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	EnsemblPlantsGene:GSBRNA2T00047680001	PFAM:PF03143	PFAM:PF03144	PANTHER:PTHR43721	PANTHER:PTHR43721:SF13
SUPFAM:SSF50447	SUPFAM:SSF50465	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0004EE10B1
SEG:seg	:	:	:	:	:

Description

BnaC03g63820DBnaC03g63820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1S6]

Coordinates

chrLK032272:-:195709..197142

Molecular Weight (calculated)

34046.3 Da

IEP (calculated)

9.775

GRAVY (calculated)

-0.106

Length

312 amino acids

Sequence
(BLAST)

001: MAISSPAACS SRLITSYSTP SLSLSPAAIS TSIKLKALNL STSFLPPLSF TTPSSSLPQS TRRSFTVRAA RGKFERKKPH YDEINAAPEE RARGITINTA
101: TIYELMDAVD SYIPIPQRQT ELPFLLAVED VFSITGRGTV ATGRVERGTV KVGEAVDLVG LRETRNYTVT GVEMFQKILD EALAGDNVGL LLRGIQKADI
201: QRGMVLAKPG SITPHTKFEA IVYVLKKEEG GRHSPFFAGY RPQFYMRTTD VTGKVTKIMN DKDEESKMVM PGDRVKIVVE LIVPVACEQG MRFAIREGGK
301: TVGAGVIQSI IE

Best Arabidopsis Sequence Match ( AT4G02930.1 )
(BLAST)

001: MASVVLRNPS SKRLVPFSSQ IYSRCGASVT SSYSISHSIG GDDLSSSTFG TSSFWRSMAT FTRNKPHVNV GTIGHVDHGK TTLTAAITKV LAEEGKAKAI
101: AFDEIDKAPE EKKRGITIAT AHVEYETAKR HYAHVDCPGH ADYVKNMITG AAQMDGGILV VSGPDGPMPQ TKEHILLARQ VGVPSLVCFL NKVDVVDDPE
201: LLELVEMELR ELLSFYKFPG DDIPIIRGSA LSALQGTNDE IGRQAILKLM DAVDEYIPDP VRVLDKPFLM PIEDVFSIQG RGTVATGRIE QGVIKVGEEV
301: EILGLREGGV PLKSTVTGVE MFKKILDNGQ AGDNVGLLLR GLKREDIQRG MVIAKPGSCK TYKKFEAEIY VLTKDEGGRH TAFFSNYRPQ FYLRTADITG
401: KVELPENVKM VMPGDNVTAV FELIMPVPLE TGQRFALREG GRTVGAGVVS KVMT

Arabidopsis Description

TUFAElongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT91]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.