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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d050969_P001 Maize plastid 96.35 96.35
Zm00001d017092_P001 Maize plastid 96.14 96.34
Os02t0595700-01 Rice plastid 89.48 89.29
TraesCS6A01G209800.1 Wheat plastid 89.27 88.51
TraesCS6B01G238600.1 Wheat plastid 88.84 88.46
TraesCS6D01G193000.1 Wheat nucleus, plastid 89.06 88.3
GSMUA_AchrUn_... Banana cytosol 34.33 87.43
Bra033753.1-P Field mustard plastid 78.54 77.22
CDX82758 Canola plastid 47.0 77.11
PGSC0003DMT400046837 Potato cytosol, extracellular, plastid 78.76 76.94
Bra013458.1-P Field mustard plastid 77.47 76.81
Solyc06g071790.2.1 Tomato nucleus, plastid 74.03 76.67
Solyc03g112150.1.1 Tomato plastid 78.33 76.52
HORVU6Hr1G053680.5 Barley plastid 84.33 76.46
PGSC0003DMT400092196 Potato plastid 78.11 76.31
Bra038805.1-P Field mustard plastid 77.68 76.21
AT4G20360.1 Thale cress plastid 77.25 75.63
VIT_17s0000g09370.t01 Wine grape plastid 78.33 75.1
GSMUA_Achr6P06690_001 Banana mitochondrion, plastid 50.21 74.76
Bra020926.1-P Field mustard plastid 68.45 74.71
CDX98668 Canola plastid 44.21 74.37
CDY49022 Canola plastid 54.72 74.34
CDY49485 Canola plastid 54.29 73.98
CDX94002 Canola plastid 43.99 72.44
CDX78988 Canola plastid 46.57 71.85
CDY54570 Canola plastid 47.64 71.15
CDY31442 Canola plastid 47.21 70.51
KRH33293 Soybean plastid 31.55 62.55
EER90508 Sorghum mitochondrion 56.01 57.62
OQU75582 Sorghum cytosol 7.3 27.2
EER97380 Sorghum cytosol 25.97 27.07
KXG20293 Sorghum cytosol 25.54 26.62
KXG20299 Sorghum cytosol 25.54 26.62
KXG20296 Sorghum cytosol 25.54 26.62
KXG20294 Sorghum cytosol 25.54 26.62
OQU75597 Sorghum cytosol 9.87 26.29
EES10540 Sorghum cytosol 25.32 21.93
EES12776 Sorghum cytosol 25.97 17.85
EES13106 Sorghum cytosol 24.89 16.52
Protein Annotations
MapMan:17.7.4.1Gene3D:2.40.30.10Gene3D:3.40.50.300EntrezGene:8056476UniProt:C5XWJ8EnsemblPlants:EES05366
ProteinID:EES05366ProteinID:EES05366.1InterPro:EFTU_2InterPro:EFTu-like_2GO:GO:0000166GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003746GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005525GO:GO:0005575GO:GO:0005576GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005730GO:GO:0005737GO:GO:0006412GO:GO:0006414GO:GO:0008135GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009295GO:GO:0009535GO:GO:0009536GO:GO:0009570
GO:GO:0009579GO:GO:0009941GO:GO:0009987GO:GO:0016020GO:GO:0016787GO:GO:0019538
GO:GO:0048046InterPro:G_TR_CSInterPro:IPR000795HAMAP:MF_00118_BInterPro:P-loop_NTPasePFAM:PF00009
PFAM:PF03143PFAM:PF03144PRINTS:PR00315ScanProsite:PS00301PFscan:PS51722PANTHER:PTHR43721
PANTHER:PTHR43721:SF6EnsemblPlantsGene:SORBI_3004G202200SUPFAM:SSF50447SUPFAM:SSF50465SUPFAM:SSF52540InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_domTIGRFAMs:TIGR00231TIGRFAMs:TIGR00485InterPro:Transl_B-barrel_sfInterPro:Transl_elong_EF1A/Init_IF2_CInterPro:Transl_elong_EFTu/EF1A_C
InterPro:Transl_elong_EFTu/EF1A_bac/orgUniParc:UPI0001A8524BRefSeq:XP_002452390.1SEG:seg::
Description
hypothetical protein
Coordinates
chr4:+:55440620..55447188
Molecular Weight (calculated)
50724.2 Da
IEP (calculated)
6.439
GRAVY (calculated)
-0.170
Length
466 amino acids
Sequence
(BLAST)
001: MASLASASTS LLFPQATSSR SRVRLSTSLG FSAQPARLRS RAAAAGGQRR GRLLVVRAAR GKFERTKPHV NIGTIGHVDH GKTTLTAALT MVLASVGGSA
101: PKKYDEIDAA PEERARGITI NTATVEYETE TRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPKIVV FLNKKDMVDD
201: EELLELVELE VRELLSNYEY DGDDVPIIAG SALKALEALM ANPALKRGDN EWVDYIFNLV DEVDNYIPVP QRQTDLPFLL AVEDVFSITG RGTVATGRIE
301: RGTVKVGDTV DIVGIRDTRT CTVTGVEMFQ KTMDDAMAGD NVGLLLRGMQ KDDIERGMVL AKPGSITPHT KFEAVVYVLK KEEGGRHSPF FPGYRPQFYM
401: RTTDVTGSVT TIMNDKDEEA KMCMPGDRIK MIVQLIQPVA CEQGMRFAIR EGGKTVGAGV INKIIE
Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)
001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE
Arabidopsis Description
TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.