CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG22896
OQU82754

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	KXG22896	AT3G54220.1	19228333
AT1G07920.1	OQU82754	AT3G54220.1	19228333
AT1G07930.1	KXG22896	AT3G54220.1	19228333
AT1G07930.1	OQU82754	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P19000_001	Banana	cytosol	56.0	90.91
VIT_19s0014g04110.t01	Wine grape	cytosol	76.0	78.51
CDY09214	Canola	cytosol	92.8	72.5
OQU75597	Sorghum	cytosol	100.0	71.43
GSMUA_Achr5P24440_001	Banana	cytosol	65.6	64.57
HORVU5Hr1G051280.1	Barley	cytosol	53.6	64.42
TraesCS2D01G320300.1	Wheat	cytosol, nucleus, plastid	77.6	61.01
Bra031601.1-P	Field mustard	cytosol	92.8	58.59
GSMUA_Achr10P...	Banana	cytosol, plastid	93.6	54.42
CDY06287	Canola	cytosol	77.6	42.73
CDY06289	Canola	cytosol	77.6	37.89
CDY67375	Canola	cytosol	77.6	34.89
GSMUA_Achr6P02020_001	Banana	mitochondrion	92.8	33.53
TraesCS2D01G320500.1	Wheat	cytosol	79.2	26.83
Bra020251.1-P	Field mustard	cytosol	87.2	26.46
HORVU4Hr1G056740.1	Barley	cytosol	93.6	26.17
KRG93959	Soybean	nucleus	93.6	26.17
KRH04781	Soybean	endoplasmic reticulum	93.6	26.17
KRH57863	Soybean	nucleus	93.6	26.17
KXG20293	Sorghum	cytosol	93.6	26.17
KXG20294	Sorghum	cytosol	93.6	26.17
KXG20296	Sorghum	cytosol	93.6	26.17
KXG20299	Sorghum	cytosol	93.6	26.17
Os03t0177400-01	Rice	cytosol	93.6	26.17
Os03t0177500-01	Rice	cytosol	93.6	26.17
Os03t0177900-01	Rice	plasma membrane	93.6	26.17
Os03t0178000-02	Rice	cytosol	93.6	26.17
PGSC0003DMT400020968	Potato	cytosol	93.6	26.17
TraesCS4A01G107600.1	Wheat	cytosol	93.6	26.17
TraesCS4A01G107700.1	Wheat	cytosol	93.6	26.17
TraesCS4B01G196900.1	Wheat	golgi	93.6	26.17
TraesCS4D01G197100.1	Wheat	cytosol	93.6	26.17
TraesCS4D01G197200.1	Wheat	cytosol	93.6	26.17
TraesCS5A01G415400.1	Wheat	cytosol	93.6	26.17
TraesCS5A01G415600.1	Wheat	cytosol	93.6	26.17
TraesCS5B01G418100.1	Wheat	cytosol	93.6	26.17
TraesCS5B01G418200.1	Wheat	cytosol	93.6	26.17
TraesCS5D01G423300.1	Wheat	cytosol	93.6	26.17
TraesCS5D01G423400.1	Wheat	cytosol	93.6	26.17
Zm00001d036904_P001	Maize	cytosol	93.6	26.17
Zm00001d046449_P003	Maize	cytosol	93.6	26.17
PGSC0003DMT400053547	Potato	cytosol	93.6	26.12
PGSC0003DMT400053553	Potato	cytosol	93.6	26.12
PGSC0003DMT400059830	Potato	cytosol	93.6	26.12
PGSC0003DMT400059832	Potato	cytosol	93.6	26.12
Solyc06g005060.2.1	Tomato	cytosol	93.6	26.12
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	93.6	26.12
EER97380	Sorghum	cytosol	92.8	25.95
KRH07098	Soybean	cytosol, mitochondrion, nucleus	92.8	25.95
KRH58241	Soybean	nucleus	92.8	25.95
PGSC0003DMT400050663	Potato	cytosol	92.8	25.95
Solyc11g069700.1.1	Tomato	nucleus	92.8	25.95
VIT_08s0040g02330.t01	Wine grape	cytosol	92.8	25.95
KRH34904	Soybean	nucleus	92.8	25.89
AT1G07920.1	Thale cress	cytosol	92.8	25.84
AT1G07930.1	Thale cress	cytosol	92.8	25.84
AT1G07940.3	Thale cress	cytosol	92.8	25.84
AT5G60390.2	Thale cress	cytosol	92.8	25.84
Bra002483.1-P	Field mustard	cytosol	92.8	25.84
Bra006661.1-P	Field mustard	cytosol	92.8	25.84
Bra018242.1-P	Field mustard	cytosol	92.8	25.84
Bra018669.1-P	Field mustard	cytosol	92.8	25.84
Bra031602.1-P	Field mustard	cytosol	92.8	25.84
VIT_06s0004g03240.t01	Wine grape	cytosol	92.0	25.73
Bra020253.1-P	Field mustard	cytosol	92.0	25.61
VIT_13s0019g03920.t01	Wine grape	cytosol	92.8	25.49
HORVU5Hr1G100200.3	Barley	mitochondrion	93.6	25.22
HORVU5Hr1G100700.3	Barley	plasma membrane	93.6	25.16
HORVU4Hr1G056820.1	Barley	plasma membrane	93.6	24.58
TraesCS4B01G196800.2	Wheat	golgi	93.6	24.22
CDX88757	Canola	cytosol	77.6	24.19
Solyc06g009960.1.1	Tomato	cytosol	79.2	24.15
CDX95108	Canola	cytosol, extracellular	92.8	23.82
HORVU6Hr1G085320.3	Barley	cytosol	83.2	23.58
HORVU6Hr1G085370.1	Barley	cytosol	83.2	23.01
CDY09211	Canola	cytosol	77.6	22.66
CDY10804	Canola	cytosol	77.6	22.66
CDY34479	Canola	cytosol	77.6	22.66
CDY61938	Canola	cytosol	77.6	22.66
VIT_06s0004g03220.t01	Wine grape	cytosol	92.0	22.2
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	72.0	22.06
Bra031605.1-P	Field mustard	cytosol	75.2	22.01
CDY22710	Canola	cytosol	75.2	22.01
CDY22711	Canola	cytosol	75.2	22.01
CDX93604	Canola	cytosol	77.6	21.09
Bra030707.1-P	Field mustard	cytosol	92.8	19.66
CDY58828	Canola	cytosol	75.2	16.55
GSMUA_Achr3P17840_001	Banana	cytosol	17.6	14.47
GSMUA_AchrUn_...	Banana	cytosol	17.6	10.53
EES10540	Sorghum	cytosol	38.4	8.92
EES13106	Sorghum	cytosol	44.8	7.98
EES12776	Sorghum	cytosol	43.2	7.96
EER90508	Sorghum	mitochondrion	28.8	7.95
GSMUA_Achr10P...	Banana	cytosol	17.6	7.89
GSMUA_Achr10P...	Banana	cytosol	17.6	7.8
EES05366	Sorghum	plastid	27.2	7.3
CDX70032	Canola	cytosol	10.4	3.78
CDY06288	Canola	cytosol	0.0	0.0
CDY06290	Canola	cytosol	0.0	0.0
CDY67376	Canola	cytosol	0.0	0.0
CDY69678	Canola	cytosol	0.0	0.0
GSMUA_Achr6P04090_001	Banana	cytosol	0.0	0.0
HORVU4Hr1G056830.1	Barley	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:C6JST2	ProteinID:EES20441.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR000795
EnsemblPlants:OQU75582	ProteinID:OQU75582	ProteinID:OQU75582.1	InterPro:P-loop_NTPase	PFAM:PF00009	PRINTS:PR00315
PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	EnsemblPlantsGene:SORBI_3K026800	SUPFAM:SSF52540	unigene:Sbi.14104
InterPro:TF_GTP-bd_dom	UniParc:UPI0001AFF6C3	RefSeq:XP_002488881.1	:	:	:

Description

hypothetical protein

Coordinates

chrsuper_2635:-:42..416

Molecular Weight (calculated)

14081.2 Da

IEP (calculated)

9.704

GRAVY (calculated)

-0.136

Length

125 amino acids

Sequence
(BLAST)

001: MGKEKTHISI VVIGHVDSGK LTTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAKRERS ITIDIALWKF ETTKYYCTVI DAPVHRAFIK
101: NMISGTSQAD CAVLIIESTT GGFEA

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.