Factsheet for HORVU4Hr1G056820.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G045920.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	HORVU5Hr1G045920.2	AT3G54220.1	19228333
AT1G07930.1	HORVU5Hr1G045920.2	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G056830.1	Barley	cytosol	61.55	100.0
HORVU4Hr1G056740.1	Barley	cytosol	93.49	99.55
TraesCS4B01G196900.1	Wheat	golgi	93.49	99.55
TraesCS4D01G197100.1	Wheat	cytosol	93.49	99.55
TraesCS4D01G197200.1	Wheat	cytosol	93.49	99.55
TraesCS4A01G107600.1	Wheat	cytosol	92.86	98.88
TraesCS4A01G107700.1	Wheat	cytosol	92.86	98.88
GSMUA_Achr5P24440_001	Banana	cytosol	26.26	98.43
CDY09214	Canola	cytosol	32.98	98.12
HORVU5Hr1G051280.1	Barley	cytosol	21.22	97.12
HORVU5Hr1G100200.3	Barley	mitochondrion	94.54	96.98
HORVU0Hr1G017020.1	Barley	cytosol	90.55	96.42
HORVU2Hr1G013680.1	Barley	cytosol, plasma membrane	90.55	96.42
KRH07098	Soybean	cytosol, mitochondrion, nucleus	90.55	96.42
HORVU5Hr1G100700.3	Barley	plasma membrane	94.12	96.34
KRG93959	Soybean	nucleus	90.34	96.2
Os03t0177400-01	Rice	cytosol	90.34	96.2
Os03t0177500-01	Rice	cytosol	90.34	96.2
Os03t0177900-01	Rice	plasma membrane	90.34	96.2
Os03t0178000-02	Rice	cytosol	90.34	96.2
GSMUA_Achr2P19000_001	Banana	cytosol	15.55	96.1
Zm00001d046449_P003	Maize	cytosol	90.13	95.97
KRH58241	Soybean	nucleus	89.92	95.75
PGSC0003DMT400050663	Potato	cytosol	89.92	95.75
Solyc11g069700.1.1	Tomato	nucleus	89.92	95.75
Zm00001d037882_P001	Maize	cytosol	37.18	95.68
CDY06287	Canola	cytosol	45.59	95.59
KRH34904	Soybean	nucleus	89.92	95.54
KXG20293	Sorghum	cytosol	89.71	95.53
KXG20294	Sorghum	cytosol	89.71	95.53
KXG20296	Sorghum	cytosol	89.71	95.53
KXG20299	Sorghum	cytosol	89.71	95.53
PGSC0003DMT400020968	Potato	cytosol	89.71	95.53
Zm00001d037875_P014	Maize	cytosol	90.34	95.34
Zm00001d037877_P014	Maize	cytosol	90.34	95.34
KRH04781	Soybean	endoplasmic reticulum	89.5	95.3
KRH57863	Soybean	nucleus	89.5	95.3
VIT_08s0040g02330.t01	Wine grape	cytosol	89.5	95.3
Zm00001d036904_P001	Maize	cytosol	89.5	95.3
Zm00001d009870_P008	Maize	cytosol	90.13	95.12
Zm00001d037873_P010	Maize	cytosol	90.13	95.12
Zm00001d037905_P010	Maize	cytosol	90.13	95.12
PGSC0003DMT400053547	Potato	cytosol	89.5	95.09
PGSC0003DMT400053553	Potato	cytosol	89.5	95.09
PGSC0003DMT400059830	Potato	cytosol	89.5	95.09
PGSC0003DMT400059832	Potato	cytosol	89.5	95.09
Solyc06g005060.2.1	Tomato	cytosol	89.5	95.09
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	89.5	95.09
VIT_06s0004g03240.t01	Wine grape	cytosol	89.29	95.08
CDY67375	Canola	cytosol	55.46	94.96
Bra031601.1-P	Field mustard	cytosol	39.5	94.95
GSMUA_Achr10P...	Banana	cytosol	56.09	94.68
Zm00001d009868_P015	Maize	cytosol	89.71	94.68
GSMUA_Achr10P...	Banana	cytosol	55.46	94.62
Solyc06g009960.1.1	Tomato	cytosol	81.3	94.39
AT1G07920.1	Thale cress	cytosol	88.87	94.21
AT1G07930.1	Thale cress	cytosol	88.87	94.21
AT1G07940.3	Thale cress	cytosol	88.87	94.21
AT5G60390.2	Thale cress	cytosol	88.87	94.21
CDY06289	Canola	cytosol	50.63	94.14
TraesCS4B01G196800.2	Wheat	golgi	95.38	94.0
OQU75582	Sorghum	cytosol	24.58	93.6
Bra002483.1-P	Field mustard	cytosol	88.24	93.54
Bra018669.1-P	Field mustard	cytosol	88.24	93.54
Bra031602.1-P	Field mustard	cytosol	88.24	93.54
CDX88757	Canola	cytosol	78.78	93.52
VIT_13s0019g03920.t01	Wine grape	cytosol	89.29	93.41
Bra018242.1-P	Field mustard	cytosol	88.03	93.32
Bra020253.1-P	Field mustard	cytosol	88.03	93.32
CDY09211	Canola	cytosol	83.82	93.22
CDY10804	Canola	cytosol	83.82	93.22
CDY34479	Canola	cytosol	83.82	93.22
CDY61938	Canola	cytosol	83.82	93.22
HORVU6Hr1G085320.3	Barley	cytosol	86.34	93.2
Bra031605.1-P	Field mustard	cytosol	83.4	92.97
CDY22710	Canola	cytosol	83.4	92.97
CDY22711	Canola	cytosol	83.4	92.97
Bra020251.1-P	Field mustard	cytosol	80.25	92.72
Bra006661.1-P	Field mustard	cytosol	87.39	92.65
GSMUA_Achr6P04090_001	Banana	cytosol	38.03	91.88
HORVU6Hr1G085370.1	Barley	cytosol	85.71	90.27
Zm00001d009887_P001	Maize	cytosol	27.52	89.73
GSMUA_Achr3P17840_001	Banana	cytosol	28.15	88.16
GSMUA_AchrUn_...	Banana	cytosol	38.45	87.56
CDX93604	Canola	cytosol	84.03	86.96
CDX95108	Canola	cytosol, extracellular	88.45	86.45
CDY06288	Canola	cytosol	20.8	86.09
CDY06290	Canola	cytosol	20.8	86.09
CDY67376	Canola	cytosol	20.8	86.09
CDY69678	Canola	cytosol	20.8	86.09
CDX70032	Canola	cytosol	62.18	86.05
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	73.53	85.78
OQU75597	Sorghum	cytosol	31.51	85.71
VIT_06s0004g03220.t01	Wine grape	cytosol	89.92	82.63
VIT_19s0014g04110.t01	Wine grape	cytosol	20.59	80.99
GSMUA_Achr10P...	Banana	cytosol, plastid	36.55	80.93
Bra030707.1-P	Field mustard	cytosol	88.24	71.19
CDY58828	Canola	cytosol	83.4	69.89
GSMUA_Achr6P02020_001	Banana	mitochondrion	50.21	69.08
HORVU2Hr1G012860.1	Barley	cytosol	33.61	32.85
HORVU3Hr1G020770.1	Barley	cytosol	10.08	30.38
HORVU5Hr1G122350.1	Barley	cytosol	19.12	29.64
HORVU0Hr1G026370.1	Barley	mitochondrion	10.92	23.53
HORVU2Hr1G079480.2	Barley	cytosol, plastid	12.61	22.56
HORVU6Hr1G053680.5	Barley	plastid	23.11	21.4
HORVU2Hr1G040960.1	Barley	mitochondrion	10.71	21.34
HORVU2Hr1G102800.6	Barley	cytosol, plastid	33.19	20.93
HORVU2Hr1G119310.19	Barley	cytosol	29.83	20.61
HORVU2Hr1G040970.1	Barley	mitochondrion	10.92	11.48

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A0A287P7E4	ncoils:Coil	InterPro:EFTu-like_2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	EnsemblPlantsGene:HORVU4Hr1G056820
EnsemblPlants:HORVU4Hr1G056820.1	InterPro:IPR000795	HAMAP:MF_00118_A	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143
PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000B486E88	SEG:seg	:

Description

Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:A0A287P7E4]

Coordinates

chrchr4H:-:477231614..477234477

Molecular Weight (calculated)

52253.5 Da

IEP (calculated)

9.697

GRAVY (calculated)

-0.230

Length

476 amino acids

Sequence
(BLAST)

001: HSPFPLPTAA ASSYRFPLLP SSLVLYPSAM GKEKTHINIV VIGHVDSGKS TTTGHLIYKL GGIDKRVIER FEKEAAEMNK RSFKYAWVLD KLKAERERGI
101: TIDIALWKFE TTKYYCTVID APGHRDFIKN MITGTSQADC AVLIIDSTTG GFEAGISKDG QTREHALLAF TLGVRQMICC CNKMDATTPK YSKARYEEIV
201: KEVSSYLKKV GYNPDKVPFV PISGFEGDNM IERSTNLDWY KGPTLLEALD QINEPKRPSD KPLRLPLQDV YKIGGIGTVP VGRVETGVIK PGMVVTFGPT
301: GLTTEVKSVE MHHESLLEAL PGDNVGFNVK NVAVKDLKRG FVASNSKDDP AKEAANFTAQ VIIMNHPGQI GNGYAPVLDC HTSHIAVKFA ELVTKIDRRS
401: GKELEALPKF LKNGDAGIVK MIPTKPMVVE TFATYPPLGR FAVRDMRQTV AVGVIKGVEK KDPTGAKVTK AAIKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.